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support for jupyterLab/jupyterHub... #845

Closed
lila opened this issue Aug 23, 2019 · 9 comments
Closed

support for jupyterLab/jupyterHub... #845

lila opened this issue Aug 23, 2019 · 9 comments

Comments

@lila
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lila commented Aug 23, 2019

I'm following the instructions on the readme site:

pip install nglview
jupyter-nbextension enable nglview --py --sys-prefix

installation works fine:

jovyan@jupyter-karan:~$    jupyter-nbextension enable nglview --py --sys-prefix
Enabling notebook extension nglview-js-widgets/extension...
      - Validating: OK

But when i try a simple nglview program, i get an error:
image

The extension seems to be for jupyter notebooks, but not jupyterlab notebooks. are there any plans to support jupyterlabs notebooks?
@hainm
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Collaborator

hainm commented Aug 24, 2019

hi @lila,
yes, nglview works in jupyterlab (most of the time) too. You have to install jupyter-labmanager and nglview-js-widgets. Please see the example here (with older nglview and older lab version), please adapt it and let me know if that works for you:
https://github.com/arose/nglview/blob/master/devtools/nglview-jupyterlab.sh

@hainm
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Collaborator

hainm commented Aug 24, 2019

I've tested and nglview 2.6.9 should work with lab 1.0.9

conda install jupyterlab -c conda-forge -y
jupyter-labextension install @jupyter-widgets/jupyterlab-manager
jupyter-labextension install  nglview-js-widgets@2.6.9
pip install nglview==2.6.9
jupyter nbextension enable --py nglview
jupyter nbextension enable --py widgetsnbextension

PS: The latest nglview 2.7.0 does not work yet with jupyterlab.

@lila
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Author

lila commented Aug 30, 2019

Thank you for the guidance. i'm still having the same issue.

I'm running jupyterLab on GCE using a pretty vanilla cloud deployment. its running in kubernetes. specific version of jupyterlab is 0.35.6

image

I ran the above commands and the log is below...

After running those commands, i restarted the kernel for the notebook, and ran the following notebook code:

image

it still produces the error. Any ideas?

  • k
jovyan@jupyter-karan:~$ jupyter-labextension install @jupyter-widgets/jupyterlab-manager
Node v11.14.0

> /srv/conda/envs/notebook/bin/npm pack @jupyter-widgets/jupyterlab-manager
npm notice
npm notice 📦  @jupyter-widgets/jupyterlab-manager@1.0.2
npm notice === Tarball Contents ===
npm notice 2.3kB  package.json
npm notice 1.5kB  LICENSE
npm notice 1.9kB  README.md
npm notice 277B   lib/index.d.ts
npm notice 380B   lib/index.js
npm notice 5.3kB  lib/manager.d.ts
npm notice 12.0kB lib/manager.js
npm notice 1.9kB  lib/output.d.ts
npm notice 5.2kB  lib/output.js
npm notice 830B   lib/plugin.d.ts
npm notice 6.7kB  lib/plugin.js
npm notice 956B   lib/renderer.d.ts
npm notice 3.3kB  lib/renderer.js
npm notice 216B   lib/semvercache.d.ts
npm notice 862B   lib/semvercache.js
npm notice 375B   schema/plugin.json
npm notice === Tarball Details ===
npm notice name:          @jupyter-widgets/jupyterlab-manager
npm notice version:       1.0.2
npm notice filename:      jupyter-widgets-jupyterlab-manager-1.0.2.tgz
npm notice package size:  11.3 kB
npm notice unpacked size: 44.0 kB
npm notice shasum:        8913784a181f7fb05d79943080549893ccb45ca1
npm notice integrity:     sha512-7c5jADfFFc16g[...]728vBtwbByyIw==
npm notice total files:   16
npm notice
jupyter-widgets-jupyterlab-manager-1.0.2.tgz
Incompatible extension:

"@jupyter-widgets/jupyterlab-manager@1.0.2" is not compatible with the current JupyterLab
Conflicting Dependencies:
JupyterLab              Extension        Package
>=0.19.1 <0.20.0        >=1.0.0 <2.0.0   @jupyterlab/application
>=2.2.1 <3.0.0          >=3.0.0 <4.0.0   @jupyterlab/coreutils
>=0.19.2 <0.20.0        >=1.0.0 <2.0.0   @jupyterlab/notebook
>=0.19.1 <0.20.0        >=1.0.0 <2.0.0   @jupyterlab/rendermime
>=3.2.1 <4.0.0          >=4.0.0 <5.0.0   @jupyterlab/services

Found compatible version: 0.38.1
> /srv/conda/envs/notebook/bin/npm pack @jupyter-widgets/jupyterlab-manager@0.38.1
npm notice
npm notice 📦  @jupyter-widgets/jupyterlab-manager@0.38.1
npm notice === Tarball Contents ===
npm notice 2.0kB package.json
npm notice 1.5kB LICENSE
npm notice 2.0kB README.md
npm notice 131B  lib/index.d.ts
npm notice 410B  lib/index.js
npm notice 2.5kB lib/manager.d.ts
npm notice 6.2kB lib/manager.js
npm notice 1.9kB lib/output.d.ts
npm notice 6.0kB lib/output.js
npm notice 1.1kB lib/plugin.d.ts
npm notice 3.6kB lib/plugin.js
npm notice 829B  lib/renderer.d.ts
npm notice 3.0kB lib/renderer.js
npm notice 216B  lib/semvercache.d.ts
npm notice 972B  lib/semvercache.js
npm notice === Tarball Details ===
npm notice name:          @jupyter-widgets/jupyterlab-manager
npm notice version:       0.38.1
npm notice filename:      jupyter-widgets-jupyterlab-manager-0.38.1.tgz
npm notice package size:  8.5 kB
npm notice unpacked size: 32.3 kB
npm notice shasum:        1b1e17c929065bd2a93057b2378562c10c3db6c0
npm notice integrity:     sha512-JutIwjs2jq6qW[...]Phr69YQ+qQZ/Q==
npm notice total files:   15
npm notice
jupyter-widgets-jupyterlab-manager-0.38.1.tgz
Node v11.14.0

> node /srv/conda/envs/notebook/lib/python3.6/site-packages/jupyterlab/staging/yarn.js install
yarn install v1.9.4
info No lockfile found.
[1/5] Validating package.json...
[2/5] Resolving packages...
warning @jupyterlab/application > @jupyterlab/coreutils > comment-json > json-parser@1.1.5: `json-parser` is deprecated. Please use `comment-json` instead
warning @jupyterlab/application > @jupyterlab/apputils > react > fbjs > core-js@1.2.7: core-js@<2.6.8 is nolonger maintained. Please, upgrade to core-js@3 or at least to actual version of core-js@2.
warning @jupyterlab/faq-extension@0.19.1: The JupyterLab FAQ extension is no longer developed and is removed from JupyterLab 1.0.
⠂ @jupyter-widgets/jupyterlab-manager@file:../extensions/jupyter-widgets-jupyterlab-manager-0.38.1.tgz(node:118) [DEP0005] DeprecationWarning: Buffer() is deprecated due to security and usability issues. Please use the Buffer.alloc(), Buffer.allocUnsafe(), or Buffer.from() methods instead.
warning css-loader > cssnano > autoprefixer > browserslist@1.7.7: Browserslist 2 could fail on reading Browserslist >3.0 config used in other tools.
warning css-loader > cssnano > postcss-merge-rules > browserslist@1.7.7: Browserslist 2 could fail on reading Browserslist >3.0 config used in other tools.
warning css-loader > cssnano > postcss-merge-rules > caniuse-api > browserslist@1.7.7: Browserslist 2 couldfail on reading Browserslist >3.0 config used in other tools.
warning css-loader > cssnano > postcss-merge-rules > postcss-selector-parser > flatten@1.0.2: I wrote this module a very long time ago; you should use something else.
[3/5] Fetching packages...
info fsevents@1.2.9: The platform "linux" is incompatible with this module.
info "fsevents@1.2.9" is an optional dependency and failed compatibility check. Excluding it from installation.
[4/5] Linking dependencies...
warning "@jupyterlab/vdom-extension > @nteract/transform-vdom@1.1.1" has incorrect peer dependency "react@^15.6.1".
warning "@jupyterlab/vega4-extension > vega-embed > vega-lite@2.7.0" has unmet peer dependency "vega@^3.0.0|| ^4.0.0".
warning "@jupyterlab/vega4-extension > vega-embed > vega-themes@2.4.0" has unmet peer dependency "vega@*".
[5/5] Building fresh packages...
success Saved lockfile.
warning Your current version of Yarn is out of date. The latest version is "1.17.3", while you're on "1.9.4".
Done in 68.36s.
> node /srv/conda/envs/notebook/lib/python3.6/site-packages/jupyterlab/staging/yarn.js run build
yarn run v1.9.4
$ webpack
Hash: fe02be0a72d63f54026a
Version: webpack 4.12.2
Time: 16626ms
Built at: 08/30/2019 3:29:33 PM
                                                             Asset       Size   Chunks             Chunk Names
                              674f50d287a8c48dc19ba404d20fe713.eot    162 KiB           [emitted]
                            af7ae505a9eed503f8b8e6982036873e.woff2   75.4 KiB           [emitted]
                              912ec66d7572ff821749319396470bde.svg    434 KiB           [emitted]
                             fee66e712a8a08eef5805a46892932ad.woff   95.7 KiB           [emitted]
                              b06871f281fee6b241d60582ae9369b9.ttf    162 KiB           [emitted]
                                      main.e4b3cb153ed8e16da5b5.js   55.4 KiB     main  [emitted]  main
                                         0.cc98107762fcc28532b3.js    4.5 KiB        0  [emitted]
                                      vega.91b98e783d16fd1b9e23.js  519 bytes     vega  [emitted]  vega
    vendors~@jupyter-widgets/controls~vega.8b1805ea3ceb0df473f6.js   22.6 KiB  vendors~@jupyter-widgets/controls~vega  [emitted]  vendors~@jupyter-widgets/controls~vega
                              vendors~main.ba4f5c003636e69b2d66.js   9.87 MiB                            vendors~main  [emitted]  vendors~main
                              vendors~vega.175a260e18ac70986591.js   2.82 MiB                            vendors~vega  [emitted]  vendors~vega
                                         1.055322dcf6c2bb19185f.js    891 KiB        1  [emitted]
         vendors~@jupyter-widgets/controls.77a393813a2a7ee01850.js    484 KiB       vendors~@jupyter-widgets/controls  [emitted]  vendors~@jupyter-widgets/controls
                                  main.e4b3cb153ed8e16da5b5.js.map   64.6 KiB     main  [emitted]  main
                                     0.cc98107762fcc28532b3.js.map   5.73 KiB        0  [emitted]
                                  vega.91b98e783d16fd1b9e23.js.map  251 bytes     vega  [emitted]  vega
vendors~@jupyter-widgets/controls~vega.8b1805ea3ceb0df473f6.js.map   15.6 KiB  vendors~@jupyter-widgets/controls~vega  [emitted]  vendors~@jupyter-widgets/controls~vega
                          vendors~main.ba4f5c003636e69b2d66.js.map   11.3 MiB                            vendors~main  [emitted]  vendors~main
                          vendors~vega.175a260e18ac70986591.js.map   2.33 MiB                            vendors~vega  [emitted]  vendors~vega
                                     1.055322dcf6c2bb19185f.js.map   1.05 MiB        1  [emitted]
     vendors~@jupyter-widgets/controls.77a393813a2a7ee01850.js.map    469 KiB       vendors~@jupyter-widgets/controls  [emitted]  vendors~@jupyter-widgets/controls
                                                        index.html   1.54 KiB           [emitted]
Entrypoint main = vendors~main.ba4f5c003636e69b2d66.js vendors~main.ba4f5c003636e69b2d66.js.map main.e4b3cb153ed8e16da5b5.js main.e4b3cb153ed8e16da5b5.js.map
 [0] multi whatwg-fetch ./build/index.out.js 40 bytes {main} [built]
 [ANye] ./build/index.out.js 36.8 KiB {main} [built]
 [yLpj] (webpack)/buildin/global.js 489 bytes {vendors~main} [built]
 [1] vertx (ignored) 15 bytes {main} [optional] [built]
 [RnhZ] ./node_modules/moment/locale sync ^\.\/.*$ 2.88 KiB {main} [optional] [built]
 [YuTi] (webpack)/buildin/module.js 497 bytes {vendors~main} [built]
 [eTbV] ./node_modules/codemirror/mode sync ^\.\/.*\.js$ 2.78 KiB {0} [built]
 [2] util (ignored) 15 bytes {main} [built]
 [4] buffer (ignored) 15 bytes {main} [optional] [built]
 [5] crypto (ignored) 15 bytes {main} [optional] [built]
 [6] readable-stream (ignored) 15 bytes {main} [built]
 [7] supports-color (ignored) 15 bytes {main} [built]
 [8] chalk (ignored) 15 bytes {main} [built]
[10] node-fetch (ignored) 15 bytes {vega} [built]
[11] fs (ignored) 15 bytes {vega} [built]
    + 2561 hidden modules

WARNING in @jupyter-widgets/base
  Multiple versions of @jupyter-widgets/base found:
    1.2.5 ./~/@jupyter-widgets/base from ./~/@jupyter-widgets/base/css/index.css
    2.0.1 ./~/@jupyter-widgets/controls/~/@jupyter-widgets/base from ./~/@jupyter-widgets/controls/~/@jupyter-widgets/base/lib/widget.js


WARNING in d3-array
  Multiple versions of d3-array found:
    1.2.4 ./~/d3-scale/~/d3-array from ./~/d3-scale/~/d3-array/src/index.js
    2.3.1 ./~/d3-array from ./~/d3-array/src/index.js


WARNING in entities
  Multiple versions of entities found:
    1.1.2 ./~/entities from ./~/htmlparser2/lib/Tokenizer.js
    2.0.0 ./~/dom-serializer/~/entities from ./~/dom-serializer/~/entities/lib/index.js


WARNING in react
  Multiple versions of react found:
    16.4.2 ./~/react from ./~/react/index.js
    16.9.0 ./~/dask-labextension/~/react from ./~/dask-labextension/lib/dashboard.js


WARNING in react-dom
  Multiple versions of react-dom found:
    16.4.2 ./~/react-dom from ./~/react-dom/index.js
    16.9.0 ./~/dask-labextension/~/react-dom from ./~/dask-labextension/~/react-dom/index.js


WARNING in safe-buffer
  Multiple versions of safe-buffer found:
    5.1.2 ./~/readable-stream/~/safe-buffer from ./~/readable-stream/lib/_stream_writable.js
    5.2.0 ./~/safe-buffer from ./~/string_decoder/lib/string_decoder.js

Check how you can resolve duplicate packages:
https://github.com/darrenscerri/duplicate-package-checker-webpack-plugin#resolving-duplicate-packages-in-your-bundle

Child html-webpack-plugin for "index.html":
     1 asset
    Entrypoint undefined = index.html
    [KTNU] ./node_modules/html-loader!./templates/partial.html 567 bytes {0} [built]
    [YuTi] (webpack)/buildin/module.js 497 bytes {0} [built]
    [aS2v] ./node_modules/html-webpack-plugin/lib/loader.js!./templates/template.html 1.22 KiB {0} [built]
    [yLpj] (webpack)/buildin/global.js 489 bytes {0} [built]
        + 1 hidden module
Done in 18.50s.
jovyan@jupyter-karan:~$ jupyter-labextension install  nglview-js-widgets@2.6.9
Node v11.14.0

> /srv/conda/envs/notebook/bin/npm pack nglview-js-widgets@2.6.9
npm notice
npm notice 📦  nglview-js-widgets@2.6.9
npm notice === Tarball Contents ===
npm notice 1.4kB  package.json
npm notice 171B   README.md
npm notice 3.8kB  dist/0de3b51742ed3ac61435875bccd8973b.png
npm notice 3.8kB  dist/208a290102a4ada58a04de354a1354d7.png
npm notice 3.8kB  dist/73a1fd052c9d84c0ee0bea3ee85892ed.png
npm notice 3.8kB  dist/971364734f3b603e5d363a2634898b42.png
npm notice 3.8kB  dist/a4c733ec4baef9ad3896d4e34a8a5448.png
npm notice 3.8kB  dist/bf27228a7d3957983584fa7698121ea1.png
npm notice 2.1MB  dist/index.js
npm notice 2.5MB  dist/index.js.map
npm notice 0      src/__init__.py
npm notice 42.7kB src/;
npm notice 698B   src/base.js
npm notice 2.0kB  src/color.js
npm notice 898B   src/css/dark.css
npm notice 20.8kB src/css/font-awesome.min.css
npm notice 990B   src/css/light.css
npm notice 8.8kB  src/css/main.css
npm notice 455B   src/embed.js
npm notice 537B   src/extension.js
npm notice 60.1kB src/gui.js
npm notice 476B   src/index.js
npm notice 411B   src/jupyterlab-plugin.js
npm notice 450B   src/labplugin.js
npm notice 5.8kB  src/lib/colorpicker.min.js
npm notice 3.2kB  src/lib/signals.min.js
npm notice 23.2kB src/lib/tether.min.js
npm notice 24.5kB src/ui/ui.extra.js
npm notice 21.6kB src/ui/ui.js
npm notice 8.0kB  src/ui/ui.ngl.js
npm notice 42.7kB src/widget_ngl.js
npm notice === Tarball Details ===
npm notice name:          nglview-js-widgets
npm notice version:       2.6.9
npm notice filename:      nglview-js-widgets-2.6.9.tgz
npm notice package size:  1.2 MB
npm notice unpacked size: 5.0 MB
npm notice shasum:        27a1734d5c66db40e5aa982c9c57ddce52b5db7e
npm notice integrity:     sha512-EatY1YKcoWoHO[...]uFKCrzmvwtGDQ==
npm notice total files:   31
npm notice
nglview-js-widgets-2.6.9.tgz
Node v11.14.0

> node /srv/conda/envs/notebook/lib/python3.6/site-packages/jupyterlab/staging/yarn.js install
yarn install v1.9.4
info No lockfile found.
[1/5] Validating package.json...
[2/5] Resolving packages...
warning @jupyterlab/application > @jupyterlab/coreutils > comment-json > json-parser@1.1.5: `json-parser` is deprecated. Please use `comment-json` instead
warning @jupyterlab/application > @jupyterlab/apputils > react > fbjs > core-js@1.2.7: core-js@<2.6.8 is nolonger maintained. Please, upgrade to core-js@3 or at least to actual version of core-js@2.
warning @jupyterlab/faq-extension@0.19.1: The JupyterLab FAQ extension is no longer developed and is removed from JupyterLab 1.0.
⠈ nglview-js-widgets@file:../extensions/nglview-js-widgets-2.6.9.tgz(node:205) [DEP0005] DeprecationWarning: Buffer() is deprecated due to security and usability issues. Please use the Buffer.alloc(), Buffer.allocUnsafe(), or Buffer.from() methods instead.
warning css-loader > cssnano > autoprefixer > browserslist@1.7.7: Browserslist 2 could fail on reading Browserslist >3.0 config used in other tools.
warning css-loader > cssnano > postcss-merge-rules > browserslist@1.7.7: Browserslist 2 could fail on reading Browserslist >3.0 config used in other tools.
warning css-loader > cssnano > postcss-merge-rules > caniuse-api > browserslist@1.7.7: Browserslist 2 couldfail on reading Browserslist >3.0 config used in other tools.
warning css-loader > cssnano > postcss-merge-rules > postcss-selector-parser > flatten@1.0.2: I wrote this module a very long time ago; you should use something else.
[3/5] Fetching packages...
info fsevents@1.2.9: The platform "linux" is incompatible with this module.
info "fsevents@1.2.9" is an optional dependency and failed compatibility check. Excluding it from installation.
[4/5] Linking dependencies...
warning "@jupyterlab/vdom-extension > @nteract/transform-vdom@1.1.1" has incorrect peer dependency "react@^15.6.1".
warning "@jupyterlab/vega4-extension > vega-embed > vega-lite@2.7.0" has unmet peer dependency "vega@^3.0.0|| ^4.0.0".
warning "@jupyterlab/vega4-extension > vega-embed > vega-themes@2.4.0" has unmet peer dependency "vega@*".
[5/5] Building fresh packages...
success Saved lockfile.
Done in 32.85s.
> node /srv/conda/envs/notebook/lib/python3.6/site-packages/jupyterlab/staging/yarn.js run build
yarn run v1.9.4
$ webpack
Hash: abb9728dd6b01a848d5c
Version: webpack 4.12.2
Time: 19981ms
Built at: 08/30/2019 3:31:01 PM
                                                             Asset       Size   Chunks             Chunk Names
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                              971364734f3b603e5d363a2634898b42.png   3.67 KiB           [emitted]
                                      main.0a126ef8d7b25466f5e8.js   56.4 KiB     main  [emitted]  main
                                         0.cc98107762fcc28532b3.js    4.5 KiB        0  [emitted]
                                      vega.91b98e783d16fd1b9e23.js  519 bytes     vega  [emitted]  vega
    vendors~@jupyter-widgets/controls~vega.8b1805ea3ceb0df473f6.js   22.6 KiB  vendors~@jupyter-widgets/controls~vega  [emitted]  vendors~@jupyter-widgets/controls~vega
                              vendors~main.6dfbbcd431f2460e119c.js   13.3 MiB                            vendors~main  [emitted]  vendors~main
                              vendors~vega.175a260e18ac70986591.js   2.82 MiB                            vendors~vega  [emitted]  vendors~vega
                                         1.055322dcf6c2bb19185f.js    891 KiB        1  [emitted]
         vendors~@jupyter-widgets/controls.6cabb32ad697af3ae185.js    454 KiB       vendors~@jupyter-widgets/controls  [emitted]  vendors~@jupyter-widgets/controls
                                  main.0a126ef8d7b25466f5e8.js.map   65.8 KiB     main  [emitted]  main
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vendors~@jupyter-widgets/controls~vega.8b1805ea3ceb0df473f6.js.map   15.6 KiB  vendors~@jupyter-widgets/controls~vega  [emitted]  vendors~@jupyter-widgets/controls~vega
                          vendors~main.6dfbbcd431f2460e119c.js.map   15.5 MiB                            vendors~main  [emitted]  vendors~main
                          vendors~vega.175a260e18ac70986591.js.map   2.33 MiB                            vendors~vega  [emitted]  vendors~vega
                                     1.055322dcf6c2bb19185f.js.map   1.05 MiB        1  [emitted]
     vendors~@jupyter-widgets/controls.6cabb32ad697af3ae185.js.map    434 KiB       vendors~@jupyter-widgets/controls  [emitted]  vendors~@jupyter-widgets/controls
                                                        index.html   1.54 KiB           [emitted]
Entrypoint main = vendors~main.6dfbbcd431f2460e119c.js vendors~main.6dfbbcd431f2460e119c.js.map main.0a126ef8d7b25466f5e8.js main.0a126ef8d7b25466f5e8.js.map
 [0] multi whatwg-fetch ./build/index.out.js 40 bytes {main} [built]
 [ANye] ./build/index.out.js 37.7 KiB {main} [built]
 [yLpj] (webpack)/buildin/global.js 489 bytes {vendors~main} [built]
 [1] vertx (ignored) 15 bytes {main} [optional] [built]
 [RnhZ] ./node_modules/moment/locale sync ^\.\/.*$ 2.88 KiB {main} [optional] [built]
 [YuTi] (webpack)/buildin/module.js 497 bytes {vendors~main} [built]
 [eTbV] ./node_modules/codemirror/mode sync ^\.\/.*\.js$ 2.78 KiB {0} [built]
 [2] util (ignored) 15 bytes {main} [built]
 [4] buffer (ignored) 15 bytes {main} [optional] [built]
 [5] crypto (ignored) 15 bytes {main} [optional] [built]
 [6] readable-stream (ignored) 15 bytes {main} [built]
 [7] supports-color (ignored) 15 bytes {main} [built]
 [8] chalk (ignored) 15 bytes {main} [built]
[10] node-fetch (ignored) 15 bytes {vega} [built]
[11] fs (ignored) 15 bytes {vega} [built]
    + 2640 hidden modules

WARNING in @jupyter-widgets/base
  Multiple versions of @jupyter-widgets/base found:
    1.2.5 ./~/@jupyter-widgets/base from ./~/@jupyter-widgets/base/css/index.css
    2.0.1 ./~/@jupyter-widgets/controls/~/@jupyter-widgets/base from ./~/@jupyter-widgets/controls/~/@jupyter-widgets/base/lib/widget.js


WARNING in d3-array
  Multiple versions of d3-array found:
    1.2.4 ./~/d3-scale/~/d3-array from ./~/d3-scale/~/d3-array/src/index.js
    2.3.1 ./~/d3-array from ./~/d3-array/src/index.js


WARNING in entities
  Multiple versions of entities found:
    1.1.2 ./~/entities from ./~/htmlparser2/lib/Tokenizer.js
    2.0.0 ./~/dom-serializer/~/entities from ./~/dom-serializer/~/entities/lib/index.js


WARNING in react
  Multiple versions of react found:
    16.4.2 ./~/react from ./~/react/index.js
    16.9.0 ./~/dask-labextension/~/react from ./~/dask-labextension/lib/dashboard.js


WARNING in react-dom
  Multiple versions of react-dom found:
    16.4.2 ./~/react-dom from ./~/react-dom/index.js
    16.9.0 ./~/dask-labextension/~/react-dom from ./~/dask-labextension/~/react-dom/index.js


WARNING in safe-buffer
  Multiple versions of safe-buffer found:
    5.1.2 ./~/readable-stream/~/safe-buffer from ./~/readable-stream/lib/_stream_readable.js
    5.2.0 ./~/safe-buffer from ./~/string_decoder/lib/string_decoder.js

Check how you can resolve duplicate packages:
https://github.com/darrenscerri/duplicate-package-checker-webpack-plugin#resolving-duplicate-packages-in-your-bundle

Child html-webpack-plugin for "index.html":
     1 asset
    Entrypoint undefined = index.html
    [KTNU] ./node_modules/html-loader!./templates/partial.html 567 bytes {0} [built]
    [YuTi] (webpack)/buildin/module.js 497 bytes {0} [built]
    [aS2v] ./node_modules/html-webpack-plugin/lib/loader.js!./templates/template.html 1.22 KiB {0} [built]
    [yLpj] (webpack)/buildin/global.js 489 bytes {0} [built]
        + 1 hidden module
Done in 21.75s.
jovyan@jupyter-karan:~$ pip install nglview==2.6.9
Collecting nglview==2.6.9
  Downloading https://files.pythonhosted.org/packages/8f/6e/2ce61d898095923a09318f6a84f53a551bf0f1b5573b51984bd86812f592/nglview-2.6.9.tar.gz (4.6MB)
     |████████████████████████████████| 4.6MB 3.4MB/s
Requirement already satisfied: ipywidgets>=7 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from nglview==2.6.9) (7.4.2)
Requirement already satisfied: numpy in /srv/conda/envs/notebook/lib/python3.6/site-packages (from nglview==2.6.9) (1.16.4)
Requirement already satisfied: nbformat>=4.2.0 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipywidgets>=7->nglview==2.6.9) (4.4.0)
Requirement already satisfied: widgetsnbextension~=3.4.0 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipywidgets>=7->nglview==2.6.9) (3.4.2)
Requirement already satisfied: ipython>=4.0.0; python_version >= "3.3" in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipywidgets>=7->nglview==2.6.9) (7.5.0)
Requirement already satisfied: traitlets>=4.3.1 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipywidgets>=7->nglview==2.6.9) (4.3.2)
Requirement already satisfied: ipykernel>=4.5.1 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipywidgets>=7->nglview==2.6.9) (5.1.0)
Requirement already satisfied: ipython_genutils in /srv/conda/envs/notebook/lib/python3.6/site-packages (from nbformat>=4.2.0->ipywidgets>=7->nglview==2.6.9) (0.2.0)
Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from nbformat>=4.2.0->ipywidgets>=7->nglview==2.6.9) (3.0.1)
Requirement already satisfied: jupyter_core in /srv/conda/envs/notebook/lib/python3.6/site-packages (from nbformat>=4.2.0->ipywidgets>=7->nglview==2.6.9) (4.4.0)
Requirement already satisfied: notebook>=4.4.1 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (5.7.8)
Requirement already satisfied: backcall in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (0.1.0)
Requirement already satisfied: pexpect; sys_platform != "win32" in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (4.7.0)
Requirement already satisfied: decorator in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (4.4.0)
Requirement already satisfied: jedi>=0.10 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (0.13.3)
Requirement already satisfied: pygments in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (2.3.1)
Requirement already satisfied: prompt-toolkit<2.1.0,>=2.0.0 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (2.0.9)
Requirement already satisfied: setuptools>=18.5 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (41.0.1)
Requirement already satisfied: pickleshare in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (0.7.5)
Requirement already satisfied: six in /srv/conda/envs/notebook/lib/python3.6/site-packages (from traitlets>=4.3.1->ipywidgets>=7->nglview==2.6.9) (1.12.0)
Requirement already satisfied: jupyter-client in /srv/conda/envs/notebook/lib/python3.6/site-packages (fromipykernel>=4.5.1->ipywidgets>=7->nglview==2.6.9) (5.2.4)
Requirement already satisfied: tornado>=4.2 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from ipykernel>=4.5.1->ipywidgets>=7->nglview==2.6.9) (5.1.1)
Requirement already satisfied: attrs>=17.4.0 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets>=7->nglview==2.6.9) (19.1.0)
Requirement already satisfied: pyrsistent>=0.14.0 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets>=7->nglview==2.6.9) (0.15.1)
Requirement already satisfied: nbconvert in /srv/conda/envs/notebook/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (5.4.1)
Requirement already satisfied: terminado>=0.8.1 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (0.8.2)
Requirement already satisfied: pyzmq>=17 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (18.0.1)
Requirement already satisfied: jinja2 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (2.10.1)
Requirement already satisfied: Send2Trash in /srv/conda/envs/notebook/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (1.5.0)
Requirement already satisfied: prometheus-client in /srv/conda/envs/notebook/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (0.6.0)
Requirement already satisfied: ptyprocess>=0.5 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from pexpect; sys_platform != "win32"->ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (0.6.0)
Requirement already satisfied: parso>=0.3.0 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from jedi>=0.10->ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (0.4.0)
Requirement already satisfied: wcwidth in /srv/conda/envs/notebook/lib/python3.6/site-packages (from prompt-toolkit<2.1.0,>=2.0.0->ipython>=4.0.0; python_version >= "3.3"->ipywidgets>=7->nglview==2.6.9) (0.1.7)
Requirement already satisfied: python-dateutil>=2.1 in /srv/conda/envs/notebook/lib/python3.6/site-packages(from jupyter-client->ipykernel>=4.5.1->ipywidgets>=7->nglview==2.6.9) (2.8.0)
Requirement already satisfied: mistune>=0.8.1 in /srv/conda/envs/notebook/lib/python3.6/site-packages (fromnbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (0.8.4)
Requirement already satisfied: entrypoints>=0.2.2 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (0.3)
Requirement already satisfied: bleach in /srv/conda/envs/notebook/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (3.1.0)
Requirement already satisfied: pandocfilters>=1.4.1 in /srv/conda/envs/notebook/lib/python3.6/site-packages(from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (1.4.2)
Requirement already satisfied: testpath in /srv/conda/envs/notebook/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (0.4.2)
Requirement already satisfied: defusedxml in /srv/conda/envs/notebook/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (0.5.0)
Requirement already satisfied: MarkupSafe>=0.23 in /srv/conda/envs/notebook/lib/python3.6/site-packages (from jinja2->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (1.1.1)
Requirement already satisfied: webencodings in /srv/conda/envs/notebook/lib/python3.6/site-packages (from bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.4.0->ipywidgets>=7->nglview==2.6.9) (0.5.1)
Building wheels for collected packages: nglview
  Building wheel for nglview (setup.py) ... done
  Stored in directory: /home/jovyan/.cache/pip/wheels/eb/c8/91/02bbcc550927045b4f9eb4840b570c2c5cee9bca4b3ad6ab9b
Successfully built nglview
Installing collected packages: nglview
Successfully installed nglview-2.6.9
jovyan@jupyter-karan:~$ jupyter nbextension enable --py nglview
Enabling notebook extension nglview-js-widgets/extension...
      - Validating: OK
jovyan@jupyter-karan:~$ jupyter nbextension enable --py widgetsnbextension
Enabling notebook extension jupyter-js-widgets/extension...
      - Validating: OK
jovyan@jupyter-karan:~$ ^C
jovyan@jupyter-karan:~$

@lila
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lila commented Aug 30, 2019

I do notice that it installed a older version of jupyterlab manager, other than that i don't see any errors in the output..

"@jupyter-widgets/jupyterlab-manager@1.0.2" is not compatible with the current JupyterLab
[snip]
Found compatible version: 0.38.1
> /srv/conda/envs/notebook/bin/npm pack @jupyter-widgets/jupyterlab-manager@0.38.1

@hainm
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hainm commented Aug 30, 2019

I am sorry I don't really know why since I only test my system in my macos or linux machine.
Here is the mybinder version of nglview with jupyter-lab: https://mybinder.org/v2/gh/hainm/nglview-binder/master?urlpath=lab/tree/nglview/notebooks

and here is the recipe:
https://github.com/hainm/nglview-binder/tree/master/binder

@hainm
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hainm commented Aug 30, 2019

@lila jupyterlab 0.35.6 is quite old. This project is evolving super quickly so nglview needs to evolve too. Please try with latest lab and nglview like the recipe I posted above.

@hainm
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hainm commented Aug 30, 2019

In short, please try again with

- jupyterlab=1.0.9
- nglview=2.7

@lila
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lila commented Aug 30, 2019

ok, thank you @hainm ... i will upgrade and try again...

@lila
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lila commented Sep 5, 2019

awesome! thank you, confirmed ...

@lila lila closed this as completed Sep 5, 2019
This was referenced Oct 4, 2019
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@hainm hainm mentioned this issue Mar 31, 2020
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@lila @hainm