$ cp Capfile codeigniter_install_dir/
$ cp -r config codeigniter_install_dir/application/
$ cap deploy:setup
$ cap deploy
$ tree -L 3 /home/httpd/my.domain.com/
/home/httpd/my.domain.com/
├── application -> /home/httpd/my.domain.com/current/application
├── current -> /home/httpd/my.domain.com/releases/20130224145516
├── html -> /home/httpd/my.domain.com/current/html
├── releases
│ └── 20130224145516
│ ├── Capfile
│ ├── REVISION
│ ├── application
│ ├── html
│ ├── log -> /home/httpd/my.domain.com/shared/log
│ ├── public
│ ├── system
│ └── tmp
├── shared
│ ├── log
│ ├── pids
│ └── system
└── system -> /home/httpd/my.domain.com/current/system
16 directories, 2 files