test failing in 3_runSpecufex.py

[tsawi]

Full error message is attached

Traceback (most recent call last):
  File "../3_runSpecUFEx.py", line 120, in <module>
    nmf.fit(X[sample], verbose=1)
  File "/Users/theresasawi/opt/anaconda3/envs/seismo2/lib/python3.7/site-packages/specufex/nmf.py", line 38, in fit
    self.h01 = 1/self.num_pat
TypeError: unsupported operand type(s) for /: 'int' and 'tuple'

test_fail_2.txt

[ngroebner]

This is due to an older version of specufex being installed.
Best to create a totally new conda environment and install the latest specufex.

Put the following into a file and name it "conda-env.yaml" or something like that:

name: spectest
channels:
  - conda-forge
  - defaults
dependencies:
  - python=3.8
  - numpy
  - scipy
  - h5py
  - jupyter
  - jupyterlab
  - matplotlib
  - pandas
  - pytables
  - pip

Then run

conda env create --file=conda-env.yml
conda activate spectest
pip install -e git+https://github.com/benholtzman/specufex.git

Then run the tests and see what happens.

A some point we need to have a mechanism for creating isolated python environments so we aren't always struggling with this! The cookiecutter template I made will do that, but I haven't adapted it to specufex yet.

[tsawi]

Ah, sorry about that.

[ngroebner]

No reason to be sorry!