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Update salmon_tutorial.rst
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halexand committed Oct 12, 2016
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Expand Up @@ -38,7 +38,7 @@ Create the salmon index:
::
salmon index -t metag_10112016.ffn -i transcript_index --type quasi -k 31

Salmon requires that paired reads be separated into two files. We can split the reads using the ``split-paired-reads.py`` from the khmer package:
Salmon requires that paired reads be separated into two files. We can split the reads using the ``split-paired-reads.py`` from the ``khmer`` package:
::
for file in *.abundtrim.subset.pe.fq.gz
do
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