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  1. MTBseq_source MTBseq_source Public

    MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis c…

    Perl 40 22

  2. HaemoSeq HaemoSeq Public

    A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.

    Shell 5 1

  3. binoSNP binoSNP Public

    🔍 💊 Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains

    Perl 1 1

  4. SMaltophilia_phylo SMaltophilia_phylo Public

    Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper

    R 1 1

  5. NTMtools NTMtools Public

    This repository contains scripts and manuals used in the paper "Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence t…

    Shell 1

  6. SARSCOV2seq SARSCOV2seq Public

    Pipeline for the analysis of SARS-CoV-2 tiled amplicon sequencing data

    Perl

Repositories

Showing 6 of 6 repositories
  • MTBseq_source Public

    MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

    ngs-fzb/MTBseq_source’s past year of commit activity
    Perl 40 22 10 1 Updated Jul 17, 2024
  • NTMtools Public

    This repository contains scripts and manuals used in the paper "Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence typing" (Diricks et al. 2022). Questions? Ask mdiricks@fz-borstel.de

    ngs-fzb/NTMtools’s past year of commit activity
    Shell 1 0 0 0 Updated May 23, 2024
  • HaemoSeq Public

    A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.

    ngs-fzb/HaemoSeq’s past year of commit activity
    Shell 5 1 0 0 Updated May 21, 2024
  • SARSCOV2seq Public

    Pipeline for the analysis of SARS-CoV-2 tiled amplicon sequencing data

    ngs-fzb/SARSCOV2seq’s past year of commit activity
    Perl 0 GPL-3.0 0 0 0 Updated Dec 8, 2023
  • binoSNP Public

    🔍 💊 Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains

    ngs-fzb/binoSNP’s past year of commit activity
    Perl 1 GPL-3.0 1 1 0 Updated Feb 12, 2020
  • SMaltophilia_phylo Public

    Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper

    ngs-fzb/SMaltophilia_phylo’s past year of commit activity
    R 1 1 1 0 Updated Dec 18, 2019

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