BioC 3.8 - BiocCheck

[nhejazi]

A current run of BiocCheck::BiocCheck(".") returns a few interesting NOTEs, given below

• "Avoid sapply(); use vapply() found in files:"
• "Use accessors; don't access S4 class slots via '@' in examples/vignettes."

Summary:
ERROR count: 0
WARNING count: 3
NOTE count: 6
For detailed information about these checks, see the BiocCheck
vignette, available at
https://bioconductor.org/packages/3.7/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#interpreting-bioccheck-output
$error
character(0)

$warning
[1] "y of x.y.z version should be even in release"                                               
[2] "Update R version dependency from 3.4 to 3.5."                                               
[3] "The following files are over 5MB in size: '.git/objects/pack/pack-fa09b8fab3b8aef3e71f2ecc0640cfe4994fb0cd.pack'"

$note
[1] "Avoid sapply(); use vapply() found in files:"                                               
[2] "Use accessors; don't access S4 class slots via '@' in examples/vignettes."                  
[3] "Consider adding runnable examples to the following man pages which document exported objects:"
[4] "Consider shorter lines; 1 lines (0%) are > 80 characters long."                             
[5] "Consider multiples of 4 spaces for line indents, 264 lines(18%) are not."                   
[6] "Cannot determine whether maintainer is subscribed to the bioc-devel\nmailing list (requires admin credentials).  Subscribe here:\nhttps://stat.ethz.ch/mailman/listinfo/bioc-devel"