Workshop IV - De-novo assembly

• The slides to this Workshop can be found here

• The recordings of the Workshop can be found on the NHM intranet under I:\Public\mkapun\FrontiersInMolecularSystematics\Workshop_IV_DeNovoAssembly

• check out the previous workshop for instructions on how to work on the Phyloserver

• In your home directory on the server, please clone this repository by typing the following command in your commandline using Visual Studio Code

git clone https://github.com/nhmvienna/Workshop_IV_DeNovoAssembly

• Then, follow the instruction in shell/assembly_pipeline.sh

For a fully automated Pipeline, see here: https://github.com/nhmvienna/AutDeNovo