Skip to content

Latest commit

 

History

History
 
 

Folders and files

NameName
Last commit message
Last commit date

parent directory

..
 
 
 
 
 
 
 
 
 
 
 
 

zarr data source

The "zarr" data source allows Neuroglancer to directly read zarr format arrays, using the following data source URL syntax:

zarr://FILE_URL, where FILE_URL is a URL to the directory containing the .zarray metadata file using any supported file protocol.

Alternatively, FILE_URL may be a URL to the directory containing the .zattrs metadata file that specifies an OME-NGFF multiscale dataset. Multiscale metadata versions 0.4, 0.5-dev and 0.5 are supported.

If the zarr array uses / rather than the default of . as the dimension separator in chunk keys, you can either specify the separator as the dimension_separator member in the .zarray metadata file (preferred) or use a data source URL of zarr://FILE_URL?dimension_separator=/.

Supported compressors:

  • raw
  • gzip
  • zlib
  • blosc

Filters are not supported.

Dimension names may be specified using an _ARRAY_DIMENSIONS attribute, as defined by xarray.

Supported data types (little and big endian):

  • uint8
  • int8
  • uint16
  • int16
  • uint32
  • int32
  • uint64
  • float32