add BioBuilds blast to avoid libssl issues

nickp60 · Mar 5, 2019 · 8915743 · 8915743
1 parent 6e798da
commit 8915743
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -1,8 +1,8 @@
 FROM continuumio/miniconda3
 MAINTAINER Nick Waters <nickp60@gmail.com>
-RUN conda install -c bioconda blast
+RUN conda install -c BioBuilds blast
 RUN git clone https://github.com/nickp60/annofilt.git ###
+# ADD . annofilt
 WORKDIR annofilt
 RUN python setup.py install
 ENTRYPOINT [ "annofilt" ]
-# RUN annofilt -h
diff --git a/annofilt/annofilt.py b/annofilt/annofilt.py
@@ -434,7 +434,7 @@ def setup_blast_db(input_file, input_type="fasta", dbtype="prot",
         makeblastdb_exe = shutil.which("makeblastdb")
         logger.debug("makeblastdb executable: %s", makeblastdb_exe)
     makedbcmd = str("{0} -in {1} -input_type {2} -dbtype {3} " +
-                    "-out {4}").format(makeblastdb_exe,
+                    "-out {4} 2> {4}.log").format(makeblastdb_exe,
                                        input_file,
                                        input_type,
                                        dbtype,