Below are the input sequences, software used and results output from the study. To retrieve a local copy with all folders included, use the 'Download ZIP' button above.
There are FASTQ formatted and zipped files in the Input_seqs folder, one for PCR and RT.
We post here the version (0.5) that was used with the study for transparency reason. It is however a now outdated pre-release, which is inferior to the current one. BION 0.5 is licensed by the GNU General Public License version 3, but we discourage its use. The current one will soon be available at http://bionsoftware.com
RDP version 11.1 and Silva version 115 were used.
The path to side-by-side comparison of PCR and RT species are,
- Results_PCR+RT/RDP/PCR+RT.species
- Results_PCR+RT/RDP/PCR+RT.species.html
- Results_PCR+RT/Silva/PCR+RT.species
- Results_PCR+RT/Silva/PCR+RT.species.html
Similar outputs are included for sequence, genus, family, order, class and phylum levels. There are counts for the pre-processing steps, see the .stats or .stats.html files in each folder.
To get the zipped results versions, download with the right mouse button, do not click on them.