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FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
TreeSwift: Fast tree module for Python 2 and 3
Efficient phylogenetic clustering of viral sequences
A collection of command-line tools I wrote to make various repetitive tasks more convenient
My solutions to problems from ROSALIND, Project Euler, and courses I have taken. This includes my own implementations of various data structures.
Repository for source code of the Data Structures online textbook (Niema Moshiri and Liz Izhikevich, 2016)
1,231 contributions in the last year
I added an extension of the Barabasi-Albert model that, when a new node is added, creates
m1 new edges with probability
p and creates
m2 new edges …
TGA to XTX (as opposed to DDS to XTX) would be a nice feature to have
in private repositories
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