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Pinned repositories


    FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

    Python 6

  2. TreeSwift

    TreeSwift: Fast tree module for Python 2 and 3

    Python 14 1

  3. TreeCluster

    Efficient phylogenetic clustering of viral sequences


  4. tools

    A collection of command-line tools I wrote to make various repetitive tasks more convenient

    Python 4 2

  5. Algorithm-Problem-Solutions

    My solutions to problems from ROSALIND, Project Euler, and courses I have taken. This includes my own implementations of various data structures.

    Java 25 29

  6. Data-Structures-Textbook

    Repository for source code of the Data Structures online textbook (Niema Moshiri and Liz Izhikevich, 2016)

    Python 4 5

1,281 contributions in the last year

Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Mon Wed Fri

Contribution activity

July 2018

Created a pull request in veg/hivtrace that received 5 comments

Fixed Python 2.7 Support

I've updated print statements and whatnot to fix Python 2.7 support. Note that I haven't actually tested this on a dataset: I've just edited until …

+8 −5 5 comments

Created an issue in veg/BioExt that received 3 comments

BioPython is not automatically installed before this

I was trying to install HIV-TRACE (pip3 install hivtrace) on my Mac OS X 10.13.5 machine running Python 3.7 (installed using Homebrew), and I encou…

1 contribution in private repositories Jul 9

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