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FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
TreeSwift: Fast tree module for Python 2 and 3
Efficient phylogenetic clustering of viral sequences
A collection of command-line tools I wrote to make various repetitive tasks more convenient
My solutions to problems from ROSALIND, Project Euler, and courses I have taken. This includes my own implementations of various data structures.
Repository for source code of the Data Structures online textbook (Niema Moshiri and Liz Izhikevich, 2016)
in the last year
I've updated print statements and whatnot to fix Python 2.7 support. Note that I haven't actually tested this on a dataset: I've just edited until …
I was trying to install HIV-TRACE (
pip3 install hivtrace) on my Mac OS X 10.13.5 machine running Python 3.7 (installed using Homebrew), and I encou…
in private repositories
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