Long format data for bacterial population

[Xiaojun928]

Hi,
Thanks for developing snpStats for population genetics analysis.
I am trying to calculate r2 for a bacterial population, there are two columns representing alleles A and B in example data "extdata/sample-long-alleles.gz". For my understanding, these two alleles are from father and mother respectively, which are applicable for diploid organisms. However, bacteria are haploid, may I know how to generate a similar input file for bacteria?

Sorry for miscreating a closed issue.

Thanks and regards,
Xiaojun