Merge pull request #201 from celprov/fix/ignore-fieldmap #210
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| name: Python package | |
| on: | |
| push: | |
| branches: [ '*' ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ master, 'maint/*' ] | |
| jobs: | |
| build: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.7, 3.8] | |
| pip: ["pip~=20.3", "pip~=21.0"] | |
| steps: | |
| - name: Install hdf5 libraries | |
| run: | | |
| sudo apt-get install pkg-config libhdf5-103 libhdf5-dev | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v2 | |
| with: | |
| ssh-key: "${{ secrets.NIPREPS_DEPLOY }}" | |
| - name: Fetch all tags (for versioneer to work) | |
| if: "!startsWith(github.ref, 'refs/tags/')" | |
| run: | | |
| /usr/bin/git -c protocol.version=2 fetch --tags --prune --unshallow origin | |
| - name: Build in confined, updated environment and interpolate version | |
| run: | | |
| python -m venv /tmp/buildenv | |
| source /tmp/buildenv/bin/activate | |
| python -m pip install -U setuptools pip wheel twine docutils | |
| python setup.py sdist bdist_wheel | |
| python -m twine check dist/dmriprep* | |
| # Interpolate version | |
| if [[ "$GITHUB_REF" == refs/tags/* ]]; then | |
| TAG=${GITHUB_REF##*/} | |
| fi | |
| THISVERSION=$( python get_version.py ) | |
| THISVERSION=${TAG:-$THISVERSION} | |
| echo "Expected VERSION: \"${THISVERSION}\"" | |
| echo "THISVERSION=${THISVERSION}" >> ${GITHUB_ENV} | |
| - name: Install in confined environment [sdist] | |
| run: | | |
| python -m venv /tmp/install_sdist | |
| source /tmp/install_sdist/bin/activate | |
| python -m pip install "${{ matrix.pip }}" setuptools | |
| python -m pip install dist/dmriprep*.tar.gz | |
| INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")') | |
| echo "VERSION: \"${THISVERSION}\"" | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| - name: Install in confined environment [wheel] | |
| run: | | |
| python -m venv /tmp/install_wheel | |
| source /tmp/install_wheel/bin/activate | |
| python -m pip install "${{ matrix.pip }}" setuptools | |
| python -m pip install dist/dmriprep*.whl | |
| INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")') | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| - name: Install in confined environment [setup.py - install] | |
| run: | | |
| python -m venv /tmp/setup_install | |
| source /tmp/setup_install/bin/activate | |
| python -m pip install "${{ matrix.pip }}" setuptools | |
| python -m pip install numpy scipy "Cython >= 0.28.5" # sklearn needs this | |
| python -m pip install scikit-learn # otherwise it attempts to build it | |
| python setup.py install | |
| INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")') | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| - name: Install in confined environment [setup.py - develop] | |
| run: | | |
| python -m venv /tmp/setup_develop | |
| source /tmp/setup_develop/bin/activate | |
| python -m pip install "${{ matrix.pip }}" setuptools | |
| # sklearn needs these dependencies | |
| python -m pip install numpy scipy "Cython >= 0.28.5" | |
| python -m pip install scikit-learn # otherwise it attempts to build it | |
| python setup.py develop | |
| INSTALLED_VERSION=$(python -c 'import dmriprep; print(dmriprep.__version__, end="")') | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| flake8: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.7 | |
| - run: pip install flake8 | |
| - run: flake8 dmriprep |