enh: use median for robuster calculation

nipreps · Apr 28, 2020 · 71973b4 · 71973b4
1 parent 7757d0f
commit 71973b4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/dmriprep/utils/vectors.py b/dmriprep/utils/vectors.py
@@ -511,6 +511,6 @@ def b0mask_from_data(dwi_file, mask_file, z_thres=3.0):
     data = np.asanyarray(nb.load(dwi_file).dataobj)
     mask = np.asanyarray(nb.load(mask_file).dataobj) > 0.5
     signal_means = np.median(data[mask, np.newaxis], axis=0)
-    zscored_means = signal_means - signal_means.mean()
+    zscored_means = signal_means - np.median(signal_means)
     zscored_means /= zscored_means.std()
     return zscored_means > z_thres