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RPT: Rename CSF/WM confounds in fMRIPlot (#3172)
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RPT: Rename CSF/WM confounds in fMRIPlot
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effigies committed Dec 6, 2023
2 parents 5f332e8 + ef7be7c commit f310950
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2 changes: 1 addition & 1 deletion docs/outputs.rst
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Expand Up @@ -629,7 +629,7 @@ An example of these plots follows:
.. figure:: _static/sub-405_ses-01_task-rest_run-01_desc-carpetplot_bold.svg

The figure shows on top several confounds estimated for the BOLD series:
global signals ('GS', 'GSCSF', 'GSWM'), DVARS,
global signals ('GS', 'CSF', 'WM'), DVARS,
and framewise-displacement ('FD').
At the bottom, a 'carpetplot' summarizing the BOLD series [Power2016]_.
The carpet plot rows correspond to voxelwise time series,
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4 changes: 2 additions & 2 deletions fmriprep/workflows/bold/confounds.py
Original file line number Diff line number Diff line change
Expand Up @@ -677,8 +677,8 @@ def init_carpetplot_wf(
tr=metadata["RepetitionTime"],
confounds_list=[
("global_signal", None, "GS"),
("csf", None, "GSCSF"),
("white_matter", None, "GSWM"),
("csf", None, "CSF"),
("white_matter", None, "WM"),
("std_dvars", None, "DVARS"),
("framewise_displacement", "mm", "FD"),
],
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