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[ENH] Dynamic citation boilerplate #1024

Merged
merged 48 commits into from
Jul 30, 2018
Merged

[ENH] Dynamic citation boilerplate #1024

merged 48 commits into from
Jul 30, 2018

Commits on Mar 5, 2018

  1. [ENH,WIP] Dynamic citation boilerplate 

    Compose a citation boilerplate in a per-workflow basis, with up-to-date software versions and generated based on the actual workflows being run.
    @oesteban
    oesteban committed Mar 5, 2018
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  2. Merge remote-tracking branch 'upstream/master' into enh/dynamic-boile… 

    …rplate
    @oesteban
    oesteban committed Mar 5, 2018
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Commits on Mar 22, 2018

  1. Merge remote-tracking branch 'upstream/master' into enh/dynamic-boile… 

    …rplate
    @oesteban
    oesteban committed Mar 22, 2018
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Commits on Apr 5, 2018

  1. Merge remote-tracking branch 'upstream/master' into enh/dynamic-boile… 

    …rplate
    @oesteban
    oesteban committed Apr 5, 2018
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Commits on Apr 10, 2018

  1. add space

    @oesteban
    oesteban committed Apr 10, 2018
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Commits on Jul 25, 2018

  1. Merge remote-tracking branch 'upstream/master' into enh/dynamic-boile… 

    …rplate
    @oesteban
    oesteban committed Jul 25, 2018
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  2. fix nipype import

    @oesteban
    oesteban committed Jul 25, 2018
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Commits on Jul 26, 2018

  1. full boilerplate, write to report, add bibliography

    @oesteban
    oesteban committed Jul 26, 2018
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Commits on Jul 27, 2018

  1. fix errors, generate html boilerplate

    @oesteban
    oesteban committed Jul 27, 2018
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  2. fix errors, install pandoc

    @oesteban
    oesteban committed Jul 27, 2018
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  3. fix report generation

    @oesteban
    oesteban committed Jul 27, 2018
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  4. pandoc as a new dependency

    @oesteban
    oesteban committed Jul 27, 2018
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  5. Merge remote-tracking branch 'upstream/master' into enh/dynamic-boile… 

    …rplate
    @oesteban
    oesteban committed Jul 27, 2018
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  6. mv CITATION.html generation to start

    @oesteban
    oesteban committed Jul 27, 2018
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  7. migrate reports.py to pathlib

    @oesteban
    oesteban committed Jul 27, 2018
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  8. use version placeholders when version not available

    @oesteban
    oesteban committed Jul 27, 2018
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  9. minor improvements

    @oesteban
    oesteban committed Jul 27, 2018
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  10. add bibliography file to installation

    @oesteban
    oesteban committed Jul 27, 2018
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  11. add missing reference for FSL flirt

    @oesteban
    oesteban committed Jul 27, 2018
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  12. fixing citations

    @oesteban
    oesteban committed Jul 27, 2018
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  13. minor fixes

    @oesteban
    oesteban committed Jul 27, 2018
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  14. fix div class

    @oesteban
    oesteban committed Jul 27, 2018
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  15. fix citations

    @oesteban
    oesteban committed Jul 27, 2018
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  16. fix nipreps#1006

    @oesteban
    oesteban committed Jul 27, 2018
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Commits on Jul 28, 2018

  1. make pandoc optional

    @oesteban
    oesteban committed Jul 28, 2018
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  2. pandoc: install official package from github

    @oesteban
    oesteban committed Jul 28, 2018
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  3. add documentation

    @oesteban
    oesteban committed Jul 28, 2018
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  4. fix curl command

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    oesteban committed Jul 28, 2018
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Commits on Jul 29, 2018

  1. update zenodo dois to point latest

    @oesteban
    oesteban committed Jul 29, 2018
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  2. fix citations, add nipype and nilearn versions

    @oesteban
    oesteban committed Jul 29, 2018
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  3. Merge remote-tracking branch 'upstream/master' into enh/dynamic-boile… 

    …rplate
    @oesteban
    oesteban committed Jul 29, 2018
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  4. global signals are not extracted with nilearn since nipreps#1170

    @oesteban
    oesteban committed Jul 29, 2018
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  5. remove repeated words

    @oesteban
    oesteban committed Jul 29, 2018
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  6. avoid repetition of skullstripping workflow

    @oesteban
    oesteban committed Jul 29, 2018
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  7. minor fixes to bibtex database

    @oesteban
    oesteban committed Jul 29, 2018
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Commits on Jul 30, 2018

  1. fix epidewarp name

    @oesteban
    oesteban committed Jul 30, 2018
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  2. we know whether sdc was performed

    @oesteban
    oesteban committed Jul 30, 2018
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  3. ensure all caps when needed

    @oesteban
    oesteban committed Jul 30, 2018
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  4. improvements to the text

    @oesteban
    oesteban committed Jul 30, 2018
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  5. show tabs for boilerplate

    @oesteban
    oesteban committed Jul 30, 2018
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  6. working out different languages

    @oesteban
    oesteban committed Jul 30, 2018
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  7. update bootstrap to 4.0+, fixes visualization of tabs

    @oesteban
    oesteban committed Jul 30, 2018
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  8. fix navbar after bootstrap upgrade, improve styling of boilerplate

    @oesteban
    oesteban committed Jul 30, 2018
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  9. add new citation LaTeX output (fix tests)

    @oesteban
    oesteban committed Jul 30, 2018
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  10. fix typo Markdown

    @oesteban
    oesteban committed Jul 30, 2018
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  11. fix typos

    @oesteban
    oesteban committed Jul 30, 2018
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  12. add citation to HCP pipelines, fix grayordinates

    @oesteban
    oesteban committed Jul 30, 2018
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  13. grayordinates sentence in the right place

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    oesteban committed Jul 30, 2018
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