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FIX: Error during version check trying to access read-only file systems #1830

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merged 3 commits into from Oct 17, 2019

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oesteban
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Adds a bugfix and a test-case. Close #1777.

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auto-comment bot commented Oct 16, 2019

Thank your for raising your pull request.

Some of the fMRIPRep maintainers will review your changes as soon as time permits.
I'm attaching below a Review Checklist for the reviewers, to copy and paste
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## PR Review

*Please check off boxes as applicable, and elaborate in comments below.  Your review is not limited to these topics, as described in the reviewer guide*

- [ ] As the reviewer I confirm that there are no conflicts of interest for me to review this work.

Please check what applies in the following aspects of the PR:

#### Code documentation

- [ ] New functions and modules are documented following the guidelines.
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- [ ] Sufficient inline comments ensure readability by other contributors in the long term.

#### Documentation site

- [ ] The modifications to *fMRIPrep* in this PR **do not require extra documentation**. This is a common situation when a bug fix that does not change the code base substantially is submitted.
- [ ] This PR requires documentation. The corresponding documentation will be submitted as an additional PR in the future.
- [ ] This PR requires extra documentation, and will be included within this PR. Please check the boxes that apply best:
  - [ ] An existing feature is substantially modified, changing the interface and/or logic of a module.
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- [ ] Yes, all expected sections of documentation were generated by the CI build, and look as expected

#### Tests

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#### Data

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#### Dependencies: smriprep

- [ ] This PR does not require any update on `smriprep`; or
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#### Dependencies: niworkflows

- [ ] This PR does not require any update on `niworkflows`; or
- [ ] `niworkflows` has correctly been pinned.

#### Dependencies: sdcflows

- [ ] This PR does not require any update on `sdcflows`; or
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#### Dependencies: Nipype

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#### Dependencies: other

- [ ] This PR does not require any update on other dependencies; or
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#### Reports generated within CI tests

- [ ] Yes, I have checked the reports of ds005 and they are not modified or the changes are as expected
- [ ] Yes, I have checked the reports of ds054 and they are not modified or the changes are as expected
- [ ] Yes, I have checked the reports of ds010 and they are not modified or the changes are as expected

### Review Comments (other than those left inline with the code)

…kip ds054][skip ds210][skip tests]

before this change, tests would break because templateflow attempts to
use home first, and the docker run command would have mounted it with
readonly.

now this is implemented separately, and a safe new $HOME mocked.

Close nipreps#1777.
@oesteban
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Okay, it seems #1836 consistently fixed the failing build_docs. The tests are run and functioning as expected. Merging.

@oesteban oesteban merged commit 475a9b8 into nipreps:master Oct 17, 2019
@oesteban oesteban deleted the fix/1777 branch October 17, 2019 23:01
effigies added a commit to nipreps/mriqc that referenced this pull request Oct 8, 2020
effigies added a commit to nipreps/mriqc that referenced this pull request Dec 12, 2020
effigies added a commit to nipreps/mriqc that referenced this pull request Dec 13, 2020
effigies added a commit to nipreps/mriqc that referenced this pull request Dec 15, 2020
effigies added a commit to nipreps/mriqc that referenced this pull request Dec 16, 2020
oesteban pushed a commit to nipreps/nireports that referenced this pull request Feb 28, 2023
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Read-only file system running 1.5.0 in Singularity
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