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DOC: Refinement of confounds documentation after #1877 #1906

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merged 7 commits into from Dec 11, 2019
Merged

DOC: Refinement of confounds documentation after #1877 #1906

merged 7 commits into from Dec 11, 2019

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oesteban
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@oesteban oesteban commented Dec 6, 2019 •
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This PR addresses further issues after #1877:

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DOC: Refinement of confounds documentation after #1877
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This PR addresses further issues:

- Address warnings 2) and 3) of #1049 - Close #1049, and I've opened #1905 to follow up conversations
- Add documentation about DCT regressors, close #1167.
- Address items 2) and 3) of #1521.
@oesteban oesteban added this to the 1.6.0 milestone Dec 6, 2019
@oesteban oesteban requested review from jdkent and kfinc December 6, 2019 19:11
@oesteban oesteban added this to In progress in Documentation via automation Dec 6, 2019
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oesteban commented Dec 6, 2019

Quick link: https://10794-53175327-gh.circle-artifacts.com//0/tmp/src/fmriprep/docs/_build/html/outputs.html

@oesteban oesteban mentioned this pull request Dec 7, 2019
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Documentation automation moved this from In progress to Reviewer approved Dec 10, 2019
mgxd
mgxd approved these changes Dec 10, 2019
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LGTM

effigies
effigies reviewed Dec 10, 2019
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oesteban and others added 2 commits December 10, 2019 09:38
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Co-Authored-By: Chris Markiewicz <markiewicz@stanford.edu>
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Address @effigies' comments
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rciric
rciric reviewed Dec 10, 2019
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Looks great! A few minor comments.

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I'd really love to have a green tick from @kfinc and/or @jdkent before merging this...

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jdkent reviewed Dec 10, 2019
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One comment on what to include about recalculation of counfounds when using ICA-AROMA

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effigies
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Added one more crucial citation for the debate.

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oesteban
oesteban commented Dec 11, 2019
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Co-Authored-By: Chris Markiewicz <markiewicz@stanford.edu>
Co-Authored-By: James Kent <james-kent@uiowa.edu>
@oesteban oesteban added this to 1.6 Blocking in Release Roadmap Dec 11, 2019
@jdkent jdkent self-requested a review December 11, 2019 23:22
@oesteban oesteban merged commit ca65f35 into master Dec 11, 2019
Documentation automation moved this from Reviewer approved to Done Dec 11, 2019
@oesteban oesteban deleted the docs/issue-1049 branch December 11, 2019 23:28
@mgxd mgxd moved this from 1.6 Blocking to Complete in master in Release Roadmap Dec 12, 2019
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kfinc commented Dec 13, 2019

Hi! Sorry for the delay, I was out of the office for 1 week. Confounds page looks great! Many thanks for incorporating all the changes.

@oesteban oesteban removed this from Done in Documentation Sep 29, 2020
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@effigies effigies effigies approved these changes

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@jdkent jdkent jdkent approved these changes

@mgxd mgxd mgxd approved these changes

@kfinc kfinc Awaiting requested review from kfinc

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Add description of CosineX regressors to the documentation
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