Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

DOC: Minor updates in outputs.rst #3148

Merged
merged 2 commits into from
Nov 21, 2023
Merged

DOC: Minor updates in outputs.rst #3148

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
a215289
DOC: Reorder hemi- and space- for BOLD GIFTI
effigies Nov 21, 2023
de9144e
DOC: Improve slice timing discussion (closes #2978)
effigies Nov 21, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
4 changes: 3 additions & 1 deletion docs/outputs.rst
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -285,7 +285,7 @@ mid-thickness surface mesh::
func/
sub-<subject_label>_[specifiers]_space-T1w_desc-aparcaseg_dseg.nii.gz
sub-<subject_label>_[specifiers]_space-T1w_desc-aseg_dseg.nii.gz
sub-<subject_label>_[specifiers]_space-<space_label>_hemi-[LR]_bold.func.gii
sub-<subject_label>_[specifiers]_hemi-[LR]_space-<space_label>_bold.func.gii

Surface output spaces include ``fsnative`` (full density subject-specific mesh),
``fsaverage`` and the down-sampled meshes ``fsaverage6`` (41k vertices) and
Expand Down Expand Up @@ -375,6 +375,8 @@ to perform more advanced denoising or alternative combination strategies.
slice as reference).
Alternatively, you could manually adjust the volume onsets (e.g. as mentioned in
the example above from [0, 2, 4] to [1, 3, 5]) or the event onsets accordingly.
In contrast to volume onsets, event onsets need to be shifted *backward* by half a TR,
for example, from [5, 10, 15] to [4, 9, 14].

Further information on this issue is found at
`this blog post (with thanks to Russell Poldrack and Jeanette Mumford)
Expand Down