use latest compilation of ANTs

circle.yml

@@ -1,7 +1,9 @@
 dependencies:
   cache_directories:
     - "~/examples/"
-    - "~/.apt-cache"
+    - "~/.apt-cache/"
+    - "~/.local/"
+    - "~/downloads/"
     - "~/workdir"
   pre:
     # Let CircleCI cache the apt archive
@@ -11,14 +13,14 @@ dependencies:
     - sudo apt-get update
     - bash ./circle_setup.sh
   override:
-    - sudo apt-get install -y fsl-core fsl-atlases fsl-mni152-templates afni ants
+    - sudo ln -sf $HOME/local/ants/* /usr/local/bin/
+    - sudo apt-get install -y fsl-core fsl-atlases fsl-mni152-templates afni
     - sudo ln -sf /usr/lib/ants/N4BiasFieldCorrection /usr/local/bin/
     - echo "source /etc/fsl/fsl.sh" >> $HOME/.profile
     - echo "source /etc/afni/afni.sh" >> $HOME/.profile
     - pip install --upgrade pip
     - pip install numpy
     - pip install sphinx sphinx-autobuild
-    - yes s | pip install -e git+https://github.com/oesteban/nipype@exp/mriqc#egg=nipype
     - pip install -r requirements.txt
     - pip install -e .
 machine:

circle_setup.sh

@@ -12,6 +12,14 @@ if [[ ! -d ${HOME}/examples/ds003_downsampled ]]; then
     tar xf ${HOME}/downloads/ds003_downsampled.tar -C ${HOME}/examples
 fi
 
+if [[ ! -d ${HOME}/local/ants ]]; then
+	mkdir -p ${HOME}/downloads
+	wget -c -O ${HOME}/downloads/ants.tar.bz2 "https://2a353b13e8d2d9ac21ce543b7064482f771ce658.googledrive.com/host/0BxI12kyv2olZVFhUcGVpYWF3R3c/ANTs-Linux_Ubuntu14.04.tar.bz2"
+	mkdir -p ${HOME}/local/ants
+	tar xjf ${HOME}/downloads/ants.tar.bz2 -C ${HOME}/local/
+	mv ${HOME}/local/ANTs.2.1.0.Debian-Ubuntu_X64 ${HOME}/local/ants
+fi
+
 mkdir -p ~/examples/ds003_sub-01
 ln -fs ~/examples/ds003_downsampled/sub-01 ~/examples/ds003_sub-01/
 echo "{plugin: MultiProc, plugin_args: {n_proc: 4}}" > ~/examples/plugin.yml