Merge pull request #1266 from nipreps/fix/dwi-group-reports

FIX: Enable group reports for DWI
nipreps · Apr 12, 2024 · 39be284 · 39be284
2 parents 5672475 + db35832
commit 39be284
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Showing 2 changed files with 50 additions and 3 deletions.
diff --git a/mriqc/data/reports/embed_resources/boxplots.js b/mriqc/data/reports/embed_resources/boxplots.js
@@ -64,8 +64,8 @@ function makeDistroChart(settings) {
     chart.data = chart.settings.data;
 
     iqmName = chart.data[0][chart.settings.xName]
-    if (iqmName.lastIndexOf('_') > 0) {
-        iqmName = iqmName.substr(0, iqmName.lastIndexOf('_'))
+    if (iqmName.indexOf('_') > 0) {
+        iqmName = iqmName.substr(0, iqmName.indexOf('_'))
     }
     chart.settings.axisLabels.yAxis = iqmName.toUpperCase()
     if (iqmName.toLowerCase().startsWith('fd') || iqmName.toLowerCase().startsWith('spikes')) {

diff --git a/mriqc/reports/group.py b/mriqc/reports/group.py
@@ -204,7 +204,54 @@ def gen_html(csv_file, mod, csv_failed=None, out_file=None):
                 None,
             ),
         ],
-        'dwi': [],
+        'dwi': [
+            ([
+                f'bdiffs_{sub}' for sub in ('max', 'mean', 'median', 'min')
+            ], 'rad'),
+            (['fa_degenerate', 'fa_nans'], 'ppm'),
+            (['spikes_ppm_global', 'spikes_ppm_slice'], 'ppm'),
+            (['ndc'], None),
+            ([f'sigma_{meth}' for meth in ('cc', 'pca', 'piesno')], None),
+            (['fd_mean'], 'mm'),
+            (['fd_num'], '# timepoints'),
+            (['fd_perc'], '% timepoints'),
+            (
+                [
+                    'summary_bg_p05',
+                    'summary_fg_p05',
+                    'summary_wm_p05',
+                    'summary_bg_mean',
+                    'summary_fg_mean',
+                    'summary_wm_mean',
+                    'summary_bg_median',
+                    'summary_fg_median',
+                    'summary_wm_median',
+                    'summary_bg_p95',
+                    'summary_fg_p95',
+                    'summary_wm_p95',
+                ],
+                'a.u.',
+            ),
+            (
+                [
+                    'summary_bg_stdv',
+                    'summary_fg_stdv',
+                    'summary_wm_stdv',
+                    'summary_bg_mad',
+                    'summary_fg_mad',
+                    'summary_wm_mad',
+                ],
+                None,
+            ),
+            (
+                [
+                    'summary_bg_k',
+                    'summary_fg_k',
+                    'summary_wm_k',
+                ],
+                None,
+            ),
+        ],
     }
 
     if csv_file.suffix == '.csv':