Merge pull request #1258 from nipreps/fix/do-not-write-some-configs

ENH: Mechanism to protect config's fields and write out config

.circleci/circle_T1w.txt

@@ -5,6 +5,7 @@ dataset_description.json
 group_T1w.html
 group_T1w.tsv
 logs
+logs/mriqcconfig.toml
 logs/mriqc.log
 sub-50137
 sub-50137/anat

.circleci/circle_bold.txt

@@ -5,6 +5,7 @@ dataset_description.json
 group_bold.html
 group_bold.tsv
 logs
+logs/mriqcconfig.toml
 logs/mriqc.log
 sub-ds205s03
 sub-ds205s03/figures

mriqc/cli/run.py

@@ -264,6 +264,7 @@ def main():
             '%Hh %Mmin %Ss',
             time.gmtime(time.time() - config.settings.start_time))
     ))
+    config.to_filename(config.execution.log_dir / 'mriqcconfig.toml')
     sys.exit(exitcode)
 
 

mriqc/config.py

@@ -217,6 +217,7 @@ class _Config:
     """An abstract class forbidding instantiation."""
 
     _paths = ()
+    _hidden = ()
 
     def __init__(self):
         """Avert instantiation."""
@@ -247,6 +248,8 @@ def get(cls):
         for k, v in cls.__dict__.items():
             if k.startswith('_') or v is None:
                 continue
+            if k in cls._hidden:
+                continue
             if callable(getattr(cls, k)):
                 continue
             if k in cls._paths:
@@ -454,6 +457,10 @@ class execution(_Config):
         'work_dir',
     )
 
+    _hidden = (
+        'webapi_token',
+    )
+
     @classmethod
     def init(cls):
         """Create a new BIDS Layout accessible with :attr:`~execution.layout`."""