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ENH: Swap background and zoomed-in visualizations in anatomical reports #1151

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merged 1 commit into from Nov 14, 2023
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ENH: Swap background and zoomed-in visualizations in anatomical reports #1151

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18 changes: 5 additions & 13 deletions mriqc/data/bootstrap-anat.yml
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Expand Up @@ -33,25 +33,18 @@ sections:
- bids: {datatype: figures, desc: summary, extension: [.html]}
- name: Basic visual report
reportlets:
- bids: {datatype: figures, desc: zoomed}
caption: This panel shows a mosaic of the brain. This mosaic is the most suitable to
screen head-motion intensity inhomogeneities, global/local noise, signal leakage
(for example, from the eyeballs and across the phase-encoding axis), etc.
subtitle: Zoomed-in mosaic view of the brain
- bids: {datatype: figures, desc: background}
caption: This panel shows a mosaic enhancing the background around the head.
Artifacts usually unveil themselves in the air surrounding the head, where no signal
sources are present.
subtitle: View of the background of the anatomical image
- bids: {datatype: figures, desc: carpet}
subtitle: Carpetplot and nuisance signals
caption: The so-called «carpetplot» may assist in assessing head-motion
derived artifacts and respiation effects.
- bids: {datatype: figures, desc: zoomed}
caption: This panel shows a mosaic of the brain. This mosaic is the most suitable to
screen head-motion intensity inhomogeneities, global/local noise, signal leakage
(for example, from the eyeballs and across the phase-encoding axis), etc.
subtitle: Zoomed-in mosaic view of the brain
- name: Extended visual report
reportlets:
- bids: {datatype: figures, desc: mean}
subtitle: Average signal through time
caption: The average signal calculated across the last axis (time).
- bids: {datatype: figures, desc: airmask}
caption: The <em>hat</em>-mask calculated internally by MRIQC. Some metrics will use this
mask, for instance, to find out artifacts and estimate the spread of gaussian noise
Expand Down Expand Up @@ -86,7 +79,6 @@ sections:
subtitle: Spatial normalization of the anatomical image
static: false


- name: About
nested: true
reportlets:
Expand Down