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FIX: Correctly set WebAPI rating endpoint in BOLD reports. #785

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merged 1 commit into from Apr 5, 2019
Merged

FIX: Correctly set WebAPI rating endpoint in BOLD reports. #785

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5 changes: 3 additions & 2 deletions mriqc/data/reports/individual.html
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Expand Up @@ -6,9 +6,10 @@
<meta name="generator" content="MRIQC" />
<title>MRIQC: individual {{ modality }}
report</title>
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous">
<script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous"></script>
<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/js/bootstrap.min.js" integrity="sha384-ChfqqxuZUCnJSK3+MXmPNIyE6ZbWh2IMqE241rYiqJxyMiZ6OW/JmZQ5stwEULTy" crossorigin="anonymous"></script>
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous">
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.7/umd/popper.min.js" integrity="sha384-UO2eT0CpHqdSJQ6hJty5KVphtPhzWj9WO1clHTMGa3JDZwrnQq4sF86dIHNDz0W1" crossorigin="anonymous"></script>
<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js" integrity="sha384-JjSmVgyd0p3pXB1rRibZUAYoIIy6OrQ6VrjIEaFf/nJGzIxFDsf4x0xIM+B07jRM" crossorigin="anonymous"></script>
<script>
function read_form() {
var ds = "{{ dataset or 'unknown' }}";
Expand Down
6 changes: 4 additions & 2 deletions mriqc/workflows/functional.py
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Expand Up @@ -262,6 +262,8 @@ def compute_iqms(settings, name='ComputeIQMs'):
addprov.inputs.settings = {
'fd_thres': settings.get('fd_thres', 0.2),
'hmc_fsl': settings.get('hmc_fsl', True),
'webapi_url': settings.get('webapi_url'),
'webapi_port': settings.get('webapi_port'),
}

# Save to JSON file
Expand Down Expand Up @@ -806,8 +808,8 @@ def _add_provenance(in_file, settings):
'md5sum': hash_infile(in_file),
'version': version,
'software': 'mriqc',
'webapi_url': settings.get('webapi_url'),
'webapi_port': settings.get('webapi_port'),
'webapi_url': settings.pop('webapi_url'),
'webapi_port': settings.pop('webapi_port'),
}

if settings:
Expand Down