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MAINT: Centralize all requirements and versions on setup.cfg #819

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merged 1 commit into from Nov 7, 2019
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MAINT: Centralize all requirements and versions on setup.cfg #819

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9 changes: 5 additions & 4 deletions Dockerfile
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Expand Up @@ -138,18 +138,19 @@ RUN python -c "from matplotlib import font_manager" && \

# Installing dev requirements (packages that are not in pypi)
WORKDIR /src/
COPY requirements.txt requirements.txt
RUN pip install --no-cache-dir -r requirements.txt

# Precaching atlases
RUN python -c "from templateflow import api as tfapi; \
COPY setup.cfg setup.cfg
RUN pip install --no-cache-dir "$( grep templateflow setup.cfg | xargs )" && \
python -c "from templateflow import api as tfapi; \
tfapi.get('MNI152NLin2009cAsym', resolution=[1, 2], suffix='T1w', desc=None); \
tfapi.get('MNI152NLin2009cAsym', resolution=[1, 2], suffix='mask',\
desc=['brain', 'head']); \
tfapi.get('MNI152NLin2009cAsym', resolution=1, suffix='dseg', desc='carpet'); \
tfapi.get('MNI152NLin2009cAsym', resolution=1, suffix='probseg',\
label=['CSF', 'GM', 'WM']);\
tfapi.get('MNI152NLin2009cAsym', resolution=[1, 2], suffix='boldref')"
tfapi.get('MNI152NLin2009cAsym', resolution=[1, 2], suffix='boldref')" && \
rm setup.cfg

# Installing MRIQC
COPY . /src/mriqc
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2 changes: 0 additions & 2 deletions requirements.txt
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This file was deleted.

3 changes: 2 additions & 1 deletion setup.cfg
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Expand Up @@ -20,7 +20,6 @@ classifiers =
[options]
python_requires = >= 3.5
install_requires =
PyYAML
dipy
jinja2
matplotlib
Expand All @@ -32,12 +31,14 @@ install_requires =
numpy
pandas>=0.21.0
pybids ~= 0.9.2
PyYAML
scikit-learn>=0.19.0
scipy
seaborn
statsmodels
svgutils
templateflow ~= 0.4.1
xvfbwrapper
test_requires =
coverage
mock
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