Skip to content

Geometry Processing of Conventionally Produced Mouse Brain Slice Images

License

Notifications You must be signed in to change notification settings

nitinagarwal/Mouse_Brain_Registration

Repository files navigation

Geometry Processing of Conventionally Produced Mouse Brain Slices.

Journal of Neuroscience Methods 2018 [Paper] [Project Page]

This is the code to register mouse brain microscopic images with annotated ARA atlas images. The method extracts dominant edges from both input images and aligns them using non-linear transformation. For more details please read the paper.

Getting Started

To run the demo, download the sample data

bash download_dataset.sh

Compile mex files

mex solveLaplace.cpp

Please read the run_me.m file.

Citation

If you use the code/data, please cite the following paper:

@article{agarwal2017mouse,
  author = {Nitin Agarwal, Xiangmin Xu, Gopi Meenakshisundaram},
  title = {Geometry Processing of Conventionally Produced Mouse Brain Slice Images},
  journal = {Journal of Neuroscience Methods},
  year = {2018}
}

License

Our code is released under MIT License (see License file for details).

Contact

Please contact Nitin Agarwal if you have any questions or comments.

About

Geometry Processing of Conventionally Produced Mouse Brain Slice Images

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published