@njdbickhart njdbickhart released this Jun 8, 2015 · 4 commits to master since this release

Assets 3

This release has the following new improvements:

  • Bugfix for "preprocess mode" concurrency sorting
  • Default temp file directory changed: now the current directory is your default temp file directory unless you use the "-p" option
  • Slight performance increase

@njdbickhart njdbickhart released this Jun 1, 2015 · 11 commits to master since this release

Assets 3

This version improves the "cluster" algorithm and has a bugfix for logging files.

@njdbickhart njdbickhart released this May 28, 2015 · 12 commits to master since this release

Assets 3

This release provides a major bug-fix for smaller datasets. If the dataset contained fewer than 10,000 discordant reads, the sort algorithm would fail due to a lack of information.

@njdbickhart njdbickhart released this May 8, 2015 · 15 commits to master since this release

Assets 3

Very minor update with better exception handling for MrsFast runtime instances.

@njdbickhart njdbickhart released this May 6, 2015 · 20 commits to master since this release

Assets 3

This version is a minor bug-fix and contains better logging features.

@njdbickhart njdbickhart released this Mar 19, 2015 · 24 commits to master since this release

Assets 3

New features!

  • RAPTR-SV preprocess mode now supports variable length read BAM files by selecting the most common read length as a standard for read filtering/trimming
  • preprocess mode also allows the user to designate the optimal read length size (if he/she is unsatisfied with the automatic detection) with the "-l" command line argument

Bug fixes

  • Fixed bugs with logger statements
  • Fixed the bug that prevented the program from deleting the temporary MrsFAST SAM file

@njdbickhart njdbickhart released this Mar 17, 2015 · 32 commits to master since this release

Assets 3

This release has some minor improvements over the previous versions, including several bug fixes.

  • Better logging
  • Better threading potential
  • Bug fixes

@njdbickhart njdbickhart released this Feb 18, 2015 · 49 commits to master since this release

Assets 3

Improvements from the previous release:

  • Better debug mode
  • Improved readme and analysis walkthrough

@njdbickhart njdbickhart released this Jan 30, 2015 · 67 commits to master since this release

Assets 3

Improvements from initial release:

  • minor bug fixes
  • improvements to weight cover algorithm to increase threading
  • dynamic programming set recalculation
  • discordant read output file format change
  • improvements to preprocessing algorithm

@njdbickhart njdbickhart released this Nov 20, 2014

Assets 3

This is a version of RAPTR-SV that is compatible with JDK version 1.7 and upwards. Better performance (and threading) is achieved with the use of the JDK1.8 RAPTR-SV; however, this release will allow the use of other Java programs that are only compatible with JDK1.7.