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Adding ordination to README (replacing nms_ord and pcoa_ord)
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njlyon0 committed Jun 12, 2024
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4 changes: 1 addition & 3 deletions README.Rmd
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Expand Up @@ -58,9 +58,7 @@ devtools::install_github("njlyon0/supportR")

- **`theme_lyon`**: Applies a set of modifications to the non-data aspects of a `ggplot2` plot to ensure a consistent "feel" of a set of plots

- **`nms_ord`**: Creates a Non-Metric Multi-Dimensional Scaling (NMS) ordination with base R. Requires the dissimilarity matrix returned by `vegan::metaMDS`

- **`pcoa_ord`**: Creates a Principal Coordinates Analysis (PCoA) ordination with base R. Requires the distance matrix returned by `ape::pcoa`
- **`ordination`**: Creates an ordination for either the nonmetric multidimensional scaling (NMS) dissimilarity matrix created by `vegan::metaMDS` or for the principal coordinates analysis (PCoA) distance matrix returned by `ape::pcoa`

### Operations Outside of R

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11 changes: 4 additions & 7 deletions README.md
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Expand Up @@ -82,13 +82,10 @@ devtools::install_github("njlyon0/supportR")
aspects of a `ggplot2` plot to ensure a consistent “feel” of a set of
plots

- **`nms_ord`**: Creates a Non-Metric Multi-Dimensional Scaling (NMS)
ordination with base R. Requires the dissimilarity matrix returned by
`vegan::metaMDS`

- **`pcoa_ord`**: Creates a Principal Coordinates Analysis (PCoA)
ordination with base R. Requires the distance matrix returned by
`ape::pcoa`
- **`ordination`**: Creates an ordination for either the nonmetric
multidimensional scaling (NMS) dissimilarity matrix created by
`vegan::metaMDS` or for the principal coordinates analysis (PCoA)
distance matrix returned by `ape::pcoa`

### Operations Outside of R

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