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Ran this Rivularia ITS sequence (fasta file attached) through the script, and found that it correctly identified everything except boxB--which surprised me, because boxB in this sequence begins and ends with the familiar [CAGCA]...[TGCTG] pattern. But then I looked at the script and saw that it's looking for CAGCA(AorC) at the beginning of boxB, and wouldn't ya know it: this boxB begins with CAGCAT! rivularia_input.txt
The text was updated successfully, but these errors were encountered:
Ran this Rivularia ITS sequence (fasta file attached) through the script, and found that it correctly identified everything except boxB--which surprised me, because boxB in this sequence begins and ends with the familiar [CAGCA]...[TGCTG] pattern. But then I looked at the script and saw that it's looking for CAGCA(AorC) at the beginning of boxB, and wouldn't ya know it: this boxB begins with CAGCAT!
rivularia_input.txt
The text was updated successfully, but these errors were encountered: