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BoxB missed when beginning w CAGCAT #6

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phycologia opened this issue Jul 3, 2022 · 2 comments
Closed

BoxB missed when beginning w CAGCAT #6

phycologia opened this issue Jul 3, 2022 · 2 comments

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@phycologia
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Ran this Rivularia ITS sequence (fasta file attached) through the script, and found that it correctly identified everything except boxB--which surprised me, because boxB in this sequence begins and ends with the familiar [CAGCA]...[TGCTG] pattern. But then I looked at the script and saw that it's looking for CAGCA(AorC) at the beginning of boxB, and wouldn't ya know it: this boxB begins with CAGCAT!
rivularia_input.txt
@nlabrad
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nlabrad commented Jul 11, 2022

Fixed in the next release. Added T as an ending option (We had CAGCAA and CAGCAC)

@nlabrad
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nlabrad commented Jul 11, 2022

Added CAGCAT

@nlabrad nlabrad closed this as completed Jul 11, 2022
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@nlabrad @phycologia