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A python package for building a biodiversity knowledge graph using Apache Airflow

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inteGraph is a biodiversity data semantification and integration toolbox designed to help ecologists make the most of available data, regardless of the initial format and location of these data. inteGraph helps you build biodiversity knowledge graphs from distributed and heterogeneous data sources with almost no code.

For more information, check the homepage of the inteGraph project.

Installation

  1. Clone the project repository
git clone https://github.com/nleguillarme/inteGraph.git
  1. Run install.sh
cd inteGraph ; sh install.sh

Building a biodiversity knowledge graph with inteGraph

Check the user manual to learn how to use inteGraph` to integrate multiple heterogenenous data sources into a biodiversity knowledge graph.

Cite inteGraph

If you used inteGraph in your work, please cite our EJSB paper:

Le Guillarme, N., & Thuiller, W. (2023). A practical approach to constructing a knowledge graph for soil ecological research. European Journal of Soil Biology, 117, 103497.

Contact us

Please use the GitHub repository's Issue tracker to report errors or specific concerns related to the use of inteGraph.

For all other enquiries, please contact Nicolas Le Guillarme: nicolas.leguillarme(at)univ-grenoble-alpes(dot)fr

Acknowledgments

inteGraph is running thanks to the following open-source softwares: Mapeathor, Morph-KGC, nomer, GNparser, confection.

License

License: Apache License 2.0

Authors

inteGraph was written by nleguillarme.

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