Add nmtest

nlmixr2 · Aug 30, 2023 · 3fddd62 · 3fddd62
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: nlmixr2data
 Title: Nonlinear Mixed Effects Models in Population PK/PD, Data
-Version: 2.0.7
+Version: 2.0.8
 Authors@R: c(person("Matthew","Fidler",
       role = c("aut", "cre"), email = "matthew.fidler@gmail.com",
       comment=c(ORCID="0000-0001-8538-6691")),

diff --git a/R/nmtest.R b/R/nmtest.R
@@ -0,0 +1,38 @@
+##' One compartment test dataset showing NONMEM 7.4.3 output
+##'
+##' This is a example dataset originally created to show how similar
+##' `mrgsolve` and NONMEM were (See ).
+##'
+##' The original dataset was created by Kyle Baron and is composed of
+##' `id<100` the `id>100` are modifications by Matthew Fidler to
+##' benchmark steady state infusions with lag times and other uncommon
+##' features.
+##'
+##' Note that `rxode2`/`nlmixr2` will not always match these behaviors
+##' by default, we choose behaviors that we believe make sense.  There
+##' are options to make `rxode2`/`nlmixr2` behave more like NONMEM.
+##' However behaviors we believe are wrong we do not support.
+##'
+##' @format A data frame with 7,157 rows and 15 columns
+##'
+##' \describe{
+##'   \item{id}{NONMEM id}
+##'   \item{time}{NONMEM time}
+##'   \item{cp}{NONMEM cp output from 7.4.3}
+##'   \item{cmt}{cmt specification 1=depot, 2=central}
+##'   \item{amt}{Nonmem dose}
+##'   \item{evid}{NONMEM Event ID}
+##'   \item{ii}{Interdose Interval}
+##'   \item{ss}{Steady state flag}
+##'   \item{addl}{Individual Clearance}
+##'   \item{rate}{Rate of the infusion}
+##'   \item{lagt}{Lag time}
+##'   \item{bioav}{Bioavailability}
+##'   \item{rat2}{Modeled rate when `mode` == 1}
+##'   \item{dur2}{Duration when `mode` == 2}
+##'   \item{mode}{Mode = 0 is no modification, modeled rate when mode=1 and modeled duration when mode=2}
+##' }
+##'
+##' @author Kyle Baron & Matthew Fidler
+##' @family nlmixr2 datasets
+"nmtest"
diff --git a/data/nmtest.rda b/data/nmtest.rda
diff --git a/man/Bolus_1CPT.Rd b/man/Bolus_1CPT.Rd
diff --git a/man/Bolus_1CPTMM.Rd b/man/Bolus_1CPTMM.Rd
diff --git a/man/Bolus_2CPT.Rd b/man/Bolus_2CPT.Rd
diff --git a/man/Bolus_2CPTMM.Rd b/man/Bolus_2CPTMM.Rd
diff --git a/man/Infusion_1CPT.Rd b/man/Infusion_1CPT.Rd
diff --git a/man/Infusion_1CPTMM.Rd b/man/Infusion_1CPTMM.Rd
diff --git a/man/Infusion_2CPT.Rd b/man/Infusion_2CPT.Rd
diff --git a/man/Infusion_2CPTMM.Rd b/man/Infusion_2CPTMM.Rd
diff --git a/man/Oral_1CPT.Rd b/man/Oral_1CPT.Rd
diff --git a/man/Oral_1CPTMM.Rd b/man/Oral_1CPTMM.Rd
diff --git a/man/Oral_2CPT.Rd b/man/Oral_2CPT.Rd
diff --git a/man/Oral_2CPTMM.Rd b/man/Oral_2CPTMM.Rd
diff --git a/man/Wang2007.Rd b/man/Wang2007.Rd
diff --git a/man/mavoglurant.Rd b/man/mavoglurant.Rd
diff --git a/man/nimoData.Rd b/man/nimoData.Rd
diff --git a/man/nmtest.Rd b/man/nmtest.Rd
diff --git a/man/pheno_sd.Rd b/man/pheno_sd.Rd
diff --git a/man/rats.Rd b/man/rats.Rd
diff --git a/man/theo_md.Rd b/man/theo_md.Rd
diff --git a/man/theo_sd.Rd b/man/theo_sd.Rd
diff --git a/man/warfarin.Rd b/man/warfarin.Rd
diff --git a/man/wbcSim.Rd b/man/wbcSim.Rd