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Update readme
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mattfidler committed Jun 26, 2023
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3 changes: 2 additions & 1 deletion README.Rmd
Expand Up @@ -46,7 +46,8 @@ install.packages('nonmem2rx')

## What you can do with `nonmem2rx`/`babelmixr2`

[![nonmem2rx-flowchart](https://github.com/nlmixr2/nonmem2rx/assets/514778/803feb11-f2d9-4a5e-af08-834d9541ac11)](https://www.page-meeting.org/default.asp?abstract=10313)
![nonmem2rx-flowchart](https://github.com/nlmixr2/nonmem2rx/assets/514778/803feb11-f2d9-4a5e-af08-834d9541ac11)


You can do many useful tasks directly converting between nlmixr2 and NONMEM models; you can:

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9 changes: 4 additions & 5 deletions README.md
Expand Up @@ -39,8 +39,7 @@ install.packages('nonmem2rx')

## What you can do with `nonmem2rx`/`babelmixr2`

[![PAGE
flowchart](https://www.page-meeting.org/default.asp?abstract=10313)](https://raw.githubusercontent.com/nlmixr2/nonmem2rx/main/nonmem2rx-flowchart.png)
![nonmem2rx-flowchart](https://github.com/nlmixr2/nonmem2rx/assets/514778/803feb11-f2d9-4a5e-af08-834d9541ac11)

You can do many useful tasks directly converting between nlmixr2 and
NONMEM models; you can:
Expand Down Expand Up @@ -118,7 +117,7 @@ ctlFile <- system.file("mods/cpt/runODE032.ctl", package="nonmem2rx")
# You can use a control stream or other file. With the development
# version of `babelmixr2`, you can simply point to the listing file
mod <- nonmem2rx(ctlFile, lst=".res", save=FALSE)
#> ℹ getting information from '/tmp/RtmpQuLnZm/temp_libpathad52294b5c7b/nonmem2rx/mods/cpt/runODE032.ctl'
#> ℹ getting information from '/tmp/RtmphCfr0E/temp_libpathaf275a605b00/nonmem2rx/mods/cpt/runODE032.ctl'
#> ℹ reading in xml file
#> ℹ done
#> ℹ reading in phi file
Expand Down Expand Up @@ -154,7 +153,7 @@ mod <- nonmem2rx(ctlFile, lst=".res", save=FALSE)
#> ℹ change initial estimate of `eta2` to `0.0993872449483344`
#> ℹ change initial estimate of `eta3` to `0.101302674763154`
#> ℹ change initial estimate of `eta4` to `0.0730497519364148`
#> ℹ read in nonmem input data (for model validation): /tmp/RtmpQuLnZm/temp_libpathad52294b5c7b/nonmem2rx/mods/cpt/Bolus_2CPT.csv
#> ℹ read in nonmem input data (for model validation): /tmp/RtmphCfr0E/temp_libpathaf275a605b00/nonmem2rx/mods/cpt/Bolus_2CPT.csv
#> ℹ ignoring lines that begin with a letter (IGNORE=@)'
#> ℹ applying names specified by $INPUT
#> ℹ subsetting accept/ignore filters code: .data[-which((.data$SD == 0)),]
Expand All @@ -167,7 +166,7 @@ mod <- nonmem2rx(ctlFile, lst=".res", save=FALSE)
#> /usr/share/R/include/R_ext/Complex.h:80:6: warning: ISO C99 doesn’t support unnamed structs/unions [-Wpedantic]
#> 80 | };
#> | ^
#> ℹ read in nonmem IPRED data (for model validation): /tmp/RtmpQuLnZm/temp_libpathad52294b5c7b/nonmem2rx/mods/cpt/runODE032.csv
#> ℹ read in nonmem IPRED data (for model validation): /tmp/RtmphCfr0E/temp_libpathaf275a605b00/nonmem2rx/mods/cpt/runODE032.csv
#> ℹ done
#> ℹ changing most variables to lower case
#> ℹ done
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