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Output.hpp
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Output.hpp
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/*
* To change this license header, choose License Headers in Project Properties.
* To change this template file, choose Tools | Templates
* and open the template in the editor.
*/
/*
* File: Output.hpp
* Author: oppy
*
* Created on February 27, 2019, 9:09 AM
*/
#ifndef OUTPUT_HPP
#define OUTPUT_HPP
#include "Information.hpp"
#include "MAS.hpp"
#include "Population.hpp"
#include "Fleet.hpp"
namespace mas {
template<typename REAL_T>
class JSONOutputGenerator {
typedef typename VariableTrait<REAL_T>::variable variable;
typedef typename std::unordered_map<int, std::shared_ptr<mas::Population<REAL_T> > >::iterator population_iterator;
typedef typename std::unordered_map<int, std::shared_ptr<mas::Fleet<REAL_T> > >::iterator fleet_iterator;
typedef typename std::unordered_map<int, std::shared_ptr<mas::Survey<REAL_T> > >::iterator survey_iterator;
typedef typename std::unordered_map<int, std::shared_ptr<mas::Area<REAL_T> > >::iterator area_iterator;
rapidjson::Document document;
void GenerateArrayObject(rapidjson::Value& array,
const std::vector<variable>& darray,
int dimensions,
size_t imax,
size_t jmax,
size_t kmax) {
size_t i, j, k;
rapidjson::Document::AllocatorType& allocator = document.GetAllocator();
if (dimensions == 1) {
for (i = 0; i < imax; i++) {
array.PushBack(darray[i].GetValue(), allocator);
}
} else if (dimensions == 2) {
for (i = 0; i < imax; i++) {
array.PushBack(rapidjson::Value(rapidjson::kArrayType), allocator);
for (j = 0; j < jmax; j++) {
size_t index = i * jmax + j;
array[i].PushBack(darray[index].GetValue(), allocator);
}
}
} else if (dimensions == 3) {
for (i = 0; i < imax; i++) {
array.PushBack(rapidjson::Value(rapidjson::kArrayType), allocator);
for (j = 0; j < jmax; j++) {
array[i].PushBack(rapidjson::Value(rapidjson::kArrayType), allocator);
for (k = 0; k < kmax; k++) {
size_t index = i * jmax * kmax + j * kmax + k;
array[i][j].PushBack(darray[index].GetValue(), allocator);
}
}
}
}
}
void GenerateArrayObject(rapidjson::Value& array,
const std::vector<REAL_T>& darray,
int dimensions,
size_t imax,
size_t jmax,
size_t kmax) {
size_t i, j, k;
rapidjson::Document::AllocatorType& allocator = document.GetAllocator();
if (dimensions == 1) {
for (i = 0; i < imax; i++) {
array.PushBack(darray[i], allocator);
}
} else if (dimensions == 2) {
for (i = 0; i < imax; i++) {
array.PushBack(rapidjson::Value(rapidjson::kArrayType), allocator);
for (j = 0; j < jmax; j++) {
size_t index = i * jmax + j;
array[i].PushBack(darray[index], allocator);
}
}
} else if (dimensions == 3) {
for (i = 0; i < imax; i++) {
array.PushBack(rapidjson::Value(rapidjson::kArrayType), allocator);
for (j = 0; j < jmax; j++) {
array[i].PushBack(rapidjson::Value(rapidjson::kArrayType), allocator);
for (k = 0; k < kmax; k++) {
size_t index = i * jmax * kmax + j * kmax + k;
array[i][j].PushBack(darray[index], allocator);
}
}
}
}
}
void GenerateArrayObject(rapidjson::Value& array,
const std::shared_ptr<DataObject<REAL_T> >& darray,
int dimensions,
size_t imax,
size_t jmax,
size_t kmax) {
size_t i, j, k;
rapidjson::Document::AllocatorType& allocator = document.GetAllocator();
if (dimensions == 1) {
for (i = 0; i < imax; i++) {
array.PushBack(darray->get(i), allocator);
}
} else if (dimensions == 2) {
for (i = 0; i < imax; i++) {
array.PushBack(rapidjson::Value(rapidjson::kArrayType), allocator);
for (j = 0; j < jmax; j++) {
array[i].PushBack(darray->get(i, j), allocator);
}
}
} else if (dimensions == 3) {
for (i = 0; i < imax; i++) {
array.PushBack(rapidjson::Value(rapidjson::kArrayType), allocator);
for (j = 0; j < jmax; j++) {
array[i].PushBack(rapidjson::Value(rapidjson::kArrayType), allocator);
for (k = 0; k < kmax; k++) {
size_t index = i * jmax * kmax + j * kmax + k;
array[i][j].PushBack(darray->get(i, j, k), allocator);
}
}
}
}
}
void GeneratePopulationInitialNumbers(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.initial_numbers, 1, popinfo.ages.size(), popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationInitialNumbersEquilibrium(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.initial_equilibrium_numbers, 1, popinfo.ages.size(), popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateLengthAtSeasonStart(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.length_at_season_start, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateLengthAtSpawning(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.length_at_spawning, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateLengthAtCatch(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.length_at_catch_time, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateLengthAtSurvey(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.length_at_survey_time, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateWeightAtSeasonStart(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.weight_at_season_start, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateWeightAtSpawning(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.weight_at_spawning, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationRecruitmentDeviations(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
}
void GeneratePopulationInitialDeviations(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
}
void GeneratePopulationNumbers(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.numbers_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationNumbers(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType& sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.numbers_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.numbers_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.numbers_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateAreaNumbers(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType& sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.numbers_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.numbers_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.numbers_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationFishingMortality(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.F, 2, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationFishingMortality(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType& sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.fishing_mortality, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.fishing_mortality_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.fishing_mortality_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationImigrants(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.imigrants, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationEmigrants(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.emigrants, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationRecruits(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.recruitment, 2, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationRecruits(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType& sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.recruits, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.recruits_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.recruits_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateAreaRecruits(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType& sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.recruits, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.recruits_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.recruits_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationRedistributedRecruits(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.redistributed_recruits, 2, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationMortality(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.Z, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationCatch(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.catch_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationCatch(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType& sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.catch_numbers_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.catch_numbers_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.catch_numbers_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateAreaCatch(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType& sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.catch_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.catch_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.catch_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationCatchBiomass(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.catch_biomass_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationCatchBiomass(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType& sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.catch_biomass_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.catch_biomass_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.catch_biomass_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateAreaCatchBiomass(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType& sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.catch_biomass_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.catch_biomass_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.catch_biomass_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationSurvey(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.survey_numbers_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationSurvey(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.survey_numbers_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.survey_numbers_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.survey_numbers_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateAreaSurvey(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.survey_numbers_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.survey_numbers_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.survey_numbers_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationSurveyBiomass(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.survey_index_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationSurveyBiomass(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.survey_biomass_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.survey_biomass_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.survey_biomass_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateReferencePoints(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType & sex) {
switch (sex) {
case mas::UNDIFFERENTIATED:
popobject.AddMember("note", "these values represent the mean across all subpopulations", this->document.GetAllocator());
popobject.AddMember("spr_F0", popinfo.msy.spr_F0, this->document.GetAllocator());
popobject.AddMember("F_msy", popinfo.msy.F_msy, this->document.GetAllocator());
popobject.AddMember("spr_msy", popinfo.msy.spr_msy, this->document.GetAllocator());
popobject.AddMember("SR_msy", popinfo.msy.SR_msy, this->document.GetAllocator());
popobject.AddMember("R_msy", popinfo.msy.R_msy, this->document.GetAllocator());
popobject.AddMember("SSB_msy", popinfo.msy.SSB_msy, this->document.GetAllocator());
popobject.AddMember("B_msy", popinfo.msy.B_msy, this->document.GetAllocator());
popobject.AddMember("E_msy", popinfo.msy.E_msy, this->document.GetAllocator());
popobject.AddMember("F30", popinfo.msy.F30, this->document.GetAllocator());
popobject.AddMember("spr_F30_msy", popinfo.msy.spr_F30_msy, this->document.GetAllocator());
popobject.AddMember("SR_F30_msy", popinfo.msy.SR_F30_msy, this->document.GetAllocator());
popobject.AddMember("R_F30_msy", popinfo.msy.R_F30_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F30_msy", popinfo.msy.SSB_F30_msy, this->document.GetAllocator());
popobject.AddMember("B_F30_msy", popinfo.msy.B_F30_msy, this->document.GetAllocator());
popobject.AddMember("E_F30_msy", popinfo.msy.E_F30_msy, this->document.GetAllocator());
popobject.AddMember("F35", popinfo.msy.F35, this->document.GetAllocator());
popobject.AddMember("spr_F35_msy", popinfo.msy.spr_F35_msy, this->document.GetAllocator());
popobject.AddMember("SR_F35_msy", popinfo.msy.SR_F35_msy, this->document.GetAllocator());
popobject.AddMember("R_F35_msy", popinfo.msy.R_F35_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F35_msy", popinfo.msy.SSB_F35_msy, this->document.GetAllocator());
popobject.AddMember("B_F35_msy", popinfo.msy.B_F35_msy, this->document.GetAllocator());
popobject.AddMember("E_F35_msy", popinfo.msy.E_F35_msy, this->document.GetAllocator());
popobject.AddMember("F40", popinfo.msy.F40, this->document.GetAllocator());
popobject.AddMember("spr_F40_msy", popinfo.msy.spr_F40_msy, this->document.GetAllocator());
popobject.AddMember("SR_F40_msy", popinfo.msy.SR_F40_msy, this->document.GetAllocator());
popobject.AddMember("R_F40_msy", popinfo.msy.R_F40_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F40_msy", popinfo.msy.SSB_F40_msy, this->document.GetAllocator());
popobject.AddMember("B_F40_msy", popinfo.msy.B_F40_msy, this->document.GetAllocator());
popobject.AddMember("E_F40_msy", popinfo.msy.E_F40_msy, this->document.GetAllocator());
break;
case mas::FEMALE:
popobject.AddMember("note", "these values represent the mean across all female subpopulations", this->document.GetAllocator());
popobject.AddMember("spr_F0", popinfo.msy_females.spr_F0, this->document.GetAllocator());
popobject.AddMember("F_msy", popinfo.msy_females.F_msy, this->document.GetAllocator());
popobject.AddMember("spr_msy", popinfo.msy_females.spr_msy, this->document.GetAllocator());
popobject.AddMember("SR_msy", popinfo.msy_females.SR_msy, this->document.GetAllocator());
popobject.AddMember("R_msy", popinfo.msy_females.R_msy, this->document.GetAllocator());
popobject.AddMember("SSB_msy", popinfo.msy_females.SSB_msy, this->document.GetAllocator());
popobject.AddMember("B_msy", popinfo.msy_females.B_msy, this->document.GetAllocator());
popobject.AddMember("E_msy", popinfo.msy_females.E_msy, this->document.GetAllocator());
popobject.AddMember("F30", popinfo.msy_females.F30, this->document.GetAllocator());
popobject.AddMember("spr_F30_msy", popinfo.msy_females.spr_F30_msy, this->document.GetAllocator());
popobject.AddMember("SR_F30_msy", popinfo.msy_females.SR_F30_msy, this->document.GetAllocator());
popobject.AddMember("R_F30_msy", popinfo.msy_females.R_F30_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F30_msy", popinfo.msy_females.SSB_F30_msy, this->document.GetAllocator());
popobject.AddMember("B_F30_msy", popinfo.msy_females.B_F30_msy, this->document.GetAllocator());
popobject.AddMember("E_F30_msy", popinfo.msy_females.E_F30_msy, this->document.GetAllocator());
popobject.AddMember("F35", popinfo.msy_females.F35, this->document.GetAllocator());
popobject.AddMember("spr_F35_msy", popinfo.msy_females.spr_F35_msy, this->document.GetAllocator());
popobject.AddMember("SR_F35_msy", popinfo.msy_females.SR_F35_msy, this->document.GetAllocator());
popobject.AddMember("R_F35_msy", popinfo.msy_females.R_F35_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F35_msy", popinfo.msy_females.SSB_F35_msy, this->document.GetAllocator());
popobject.AddMember("B_F35_msy", popinfo.msy_females.B_F35_msy, this->document.GetAllocator());
popobject.AddMember("E_F35_msy", popinfo.msy_females.E_F35_msy, this->document.GetAllocator());
popobject.AddMember("F40", popinfo.msy_females.F40, this->document.GetAllocator());
popobject.AddMember("spr_F40_msy", popinfo.msy_females.spr_F40_msy, this->document.GetAllocator());
popobject.AddMember("SR_F40_msy", popinfo.msy_females.SR_F40_msy, this->document.GetAllocator());
popobject.AddMember("R_F40_msy", popinfo.msy_females.R_F40_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F40_msy", popinfo.msy_females.SSB_F40_msy, this->document.GetAllocator());
popobject.AddMember("B_F40_msy", popinfo.msy_females.B_F40_msy, this->document.GetAllocator());
popobject.AddMember("E_F40_msy", popinfo.msy_females.E_F40_msy, this->document.GetAllocator());
break;
case mas::MALE:
popobject.AddMember("note", "these values represent the mean across all male subpopulations", this->document.GetAllocator());
popobject.AddMember("spr_F0", popinfo.msy_males.spr_F0, this->document.GetAllocator());
popobject.AddMember("F_msy", popinfo.msy_males.F_msy, this->document.GetAllocator());
popobject.AddMember("spr_msy", popinfo.msy_males.spr_msy, this->document.GetAllocator());
popobject.AddMember("SR_msy", popinfo.msy_males.SR_msy, this->document.GetAllocator());
popobject.AddMember("R_msy", popinfo.msy_males.R_msy, this->document.GetAllocator());
popobject.AddMember("SSB_msy", popinfo.msy_males.SSB_msy, this->document.GetAllocator());
popobject.AddMember("B_msy", popinfo.msy_males.B_msy, this->document.GetAllocator());
popobject.AddMember("E_msy", popinfo.msy_males.E_msy, this->document.GetAllocator());
popobject.AddMember("F30", popinfo.msy_males.F30, this->document.GetAllocator());
popobject.AddMember("spr_F30_msy", popinfo.msy_males.spr_F30_msy, this->document.GetAllocator());
popobject.AddMember("SR_F30_msy", popinfo.msy_males.SR_F30_msy, this->document.GetAllocator());
popobject.AddMember("R_F30_msy", popinfo.msy_males.R_F30_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F30_msy", popinfo.msy_males.SSB_F30_msy, this->document.GetAllocator());
popobject.AddMember("B_F30_msy", popinfo.msy_males.B_F30_msy, this->document.GetAllocator());
popobject.AddMember("E_F30_msy", popinfo.msy_males.E_F30_msy, this->document.GetAllocator());
popobject.AddMember("F35", popinfo.msy_males.F35, this->document.GetAllocator());
popobject.AddMember("spr_F35_msy", popinfo.msy_males.spr_F35_msy, this->document.GetAllocator());
popobject.AddMember("SR_F35_msy", popinfo.msy_males.SR_F35_msy, this->document.GetAllocator());
popobject.AddMember("R_F35_msy", popinfo.msy_males.R_F35_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F35_msy", popinfo.msy_males.SSB_F35_msy, this->document.GetAllocator());
popobject.AddMember("B_F35_msy", popinfo.msy_males.B_F35_msy, this->document.GetAllocator());
popobject.AddMember("E_F35_msy", popinfo.msy_males.E_F35_msy, this->document.GetAllocator());
popobject.AddMember("F40", popinfo.msy_males.F40, this->document.GetAllocator());
popobject.AddMember("spr_F40_msy", popinfo.msy_males.spr_F40_msy, this->document.GetAllocator());
popobject.AddMember("SR_F40_msy", popinfo.msy_males.SR_F40_msy, this->document.GetAllocator());
popobject.AddMember("R_F40_msy", popinfo.msy_males.R_F40_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F40_msy", popinfo.msy_males.SSB_F40_msy, this->document.GetAllocator());
popobject.AddMember("B_F40_msy", popinfo.msy_males.B_F40_msy, this->document.GetAllocator());
popobject.AddMember("E_F40_msy", popinfo.msy_males.E_F40_msy, this->document.GetAllocator());
break;
}
}
void GenerateReferencePoints(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
popobject.AddMember("spr_F0", popinfo.msy.spr_F0, this->document.GetAllocator());
popobject.AddMember("F_msy", popinfo.msy.F_msy, this->document.GetAllocator());
popobject.AddMember("spr_msy", popinfo.msy.spr_msy, this->document.GetAllocator());
popobject.AddMember("SR_msy", popinfo.msy.SR_msy, this->document.GetAllocator());
popobject.AddMember("R_msy", popinfo.msy.R_msy, this->document.GetAllocator());
popobject.AddMember("SSB_msy", popinfo.msy.SSB_msy, this->document.GetAllocator());
popobject.AddMember("B_msy", popinfo.msy.B_msy, this->document.GetAllocator());
popobject.AddMember("E_msy", popinfo.msy.E_msy, this->document.GetAllocator());
popobject.AddMember("F30", popinfo.msy.F30, this->document.GetAllocator());
popobject.AddMember("spr_F30_msy", popinfo.msy.spr_F30_msy, this->document.GetAllocator());
popobject.AddMember("SR_F30_msy", popinfo.msy.SR_F30_msy, this->document.GetAllocator());
popobject.AddMember("R_F30_msy", popinfo.msy.R_F30_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F30_msy", popinfo.msy.SSB_F30_msy, this->document.GetAllocator());
popobject.AddMember("B_F30_msy", popinfo.msy.B_F30_msy, this->document.GetAllocator());
popobject.AddMember("E_F30_msy", popinfo.msy.E_F30_msy, this->document.GetAllocator());
popobject.AddMember("F35", popinfo.msy.F35, this->document.GetAllocator());
popobject.AddMember("spr_F35_msy", popinfo.msy.spr_F35_msy, this->document.GetAllocator());
popobject.AddMember("SR_F35_msy", popinfo.msy.SR_F35_msy, this->document.GetAllocator());
popobject.AddMember("R_F35_msy", popinfo.msy.R_F35_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F35_msy", popinfo.msy.SSB_F35_msy, this->document.GetAllocator());
popobject.AddMember("B_F35_msy", popinfo.msy.B_F35_msy, this->document.GetAllocator());
popobject.AddMember("E_F35_msy", popinfo.msy.E_F35_msy, this->document.GetAllocator());
popobject.AddMember("F40", popinfo.msy.F40, this->document.GetAllocator());
popobject.AddMember("spr_F40_msy", popinfo.msy.spr_F40_msy, this->document.GetAllocator());
popobject.AddMember("SR_F40_msy", popinfo.msy.SR_F40_msy, this->document.GetAllocator());
popobject.AddMember("R_F40_msy", popinfo.msy.R_F40_msy, this->document.GetAllocator());
popobject.AddMember("SSB_F40_msy", popinfo.msy.SSB_F40_msy, this->document.GetAllocator());
popobject.AddMember("B_F40_msy", popinfo.msy.B_F40_msy, this->document.GetAllocator());
popobject.AddMember("E_F40_msy", popinfo.msy.E_F40_msy, this->document.GetAllocator());
}
void GenerateAreaSurveyBiomass(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.survey_biomass_at_age, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.survey_biomass_at_age_males, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.survey_biomass_at_age_females, 3, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationAbundance(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.abundance, 2, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationAbundance(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.abundance, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.abundance_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.abundance_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateAreaAbundance(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.abundance, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.abundance_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.abundance_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationRecruitment(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.recruitment, 2, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationRecruitment(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.recruits, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.recruits_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.recruits_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateAreaRecruitment(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.recruits, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.recruits_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.recruits_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationBiomassTotal(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.biomass_total, 2, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationBiomassTotal(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.biomass_total, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.biomass_total_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.biomass_total_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateAreaBiomassTotal(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.biomass, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.biomass_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.biomass_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationSpawningStockBiomass(rapidjson::Value& popobject,
const mas::Subpopulation<REAL_T> & popinfo) {
rapidjson::Value obj(rapidjson::kArrayType);
this->GenerateArrayObject(obj, popinfo.spawning_stock_biomass, 2, popinfo.years, popinfo.seasons, popinfo.ages.size());
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GeneratePopulationSpawningStockBiomass(rapidjson::Value& popobject,
const mas::Population<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.spawning_stock_biomass, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.spawning_stock_biomass_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.spawning_stock_biomass_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateAreaSpawningStockBiomass(rapidjson::Value& popobject,
const mas::Area<REAL_T> & popinfo, const mas::FishSexType & sex) {
rapidjson::Value obj(rapidjson::kArrayType);
switch (sex) {
case mas::UNDIFFERENTIATED:
this->GenerateArrayObject(obj, popinfo.spawning_stock_biomass, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::MALE:
this->GenerateArrayObject(obj, popinfo.spawning_stock_biomass_males, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
case mas::FEMALE:
this->GenerateArrayObject(obj, popinfo.spawning_stock_biomass_females, 2, popinfo.years, popinfo.seasons, popinfo.ages);
break;
}
popobject.AddMember("values", obj, this->document.GetAllocator());
}
void GenerateFleetOutput(rapidjson::Value& popobject,
const std::shared_ptr<mas::Fleet<REAL_T> >& fleet) {
rapidjson::Value females(rapidjson::kObjectType);
rapidjson::Value males(rapidjson::kObjectType);
rapidjson::Value undiff(rapidjson::kObjectType);
rapidjson::Value expected_catch_biomassfemales(rapidjson::kObjectType);
rapidjson::Value expected_catch_biomass_females_t(rapidjson::kObjectType);
rapidjson::Value expected_catch_biomass_males(rapidjson::kObjectType);
rapidjson::Value expected_catch_biomass_males_t(rapidjson::kObjectType);
rapidjson::Value expected_catch_biomas_totals(rapidjson::kObjectType);
rapidjson::Value expected_catch_biomas_totals_t(rapidjson::kObjectType);
rapidjson::Value expected_catch_numbers_females(rapidjson::kObjectType);
rapidjson::Value expected_catch_numbers_males(rapidjson::kObjectType);
rapidjson::Value expected_catch_numbers_total(rapidjson::kObjectType);
rapidjson::Value expected_catch_proportions_females(rapidjson::kObjectType);
rapidjson::Value expected_catch_proportions_males(rapidjson::kObjectType);
rapidjson::Value expected_catch_proportions_total(rapidjson::kObjectType);
rapidjson::Value observed(rapidjson::kObjectType);
rapidjson::Value array(rapidjson::kArrayType);
this->GenerateArrayObject(array, fleet->catch_at_age_females, 3, fleet->years, fleet->seasons, fleet->ages);
expected_catch_numbers_females.AddMember("units", "1000 fish", this->document.GetAllocator());
expected_catch_numbers_females.AddMember("values", array, this->document.GetAllocator());
females.AddMember("catch_at_age", expected_catch_numbers_females, this->document.GetAllocator());
rapidjson::Value array2(rapidjson::kArrayType);
this->GenerateArrayObject(array2, fleet->catch_proportion_at_age_females, 3, fleet->years, fleet->seasons, fleet->ages);
expected_catch_proportions_females.AddMember("values", array2, this->document.GetAllocator());
females.AddMember("catch_proportion_at_age", expected_catch_proportions_females, this->document.GetAllocator());
rapidjson::Value array3(rapidjson::kArrayType);
this->GenerateArrayObject(array3, fleet->catch_biomass_at_age_females, 3, fleet->years, fleet->seasons, fleet->ages);
expected_catch_biomassfemales.AddMember("units", "mt", this->document.GetAllocator());
expected_catch_biomassfemales.AddMember("values", array3, this->document.GetAllocator());
females.AddMember("catch_biomass_at_age", expected_catch_biomassfemales, this->document.GetAllocator());
rapidjson::Value array8(rapidjson::kArrayType);
this->GenerateArrayObject(array8, fleet->catch_biomass_total_females, 2, fleet->years, fleet->seasons, fleet->ages);
expected_catch_biomass_females_t.AddMember("units", "mt", this->document.GetAllocator());
expected_catch_biomass_females_t.AddMember("values", array8, this->document.GetAllocator());
females.AddMember("catch_biomass", expected_catch_biomass_females_t, this->document.GetAllocator());
popobject.AddMember("females", females, this->document.GetAllocator());
rapidjson::Value array4(rapidjson::kArrayType);
this->GenerateArrayObject(array4, fleet->catch_at_age_males, 3, fleet->years, fleet->seasons, fleet->ages);
expected_catch_numbers_males.AddMember("units", "1000 fish", this->document.GetAllocator());
expected_catch_numbers_males.AddMember("values", array4, this->document.GetAllocator());
males.AddMember("catch_at_age", expected_catch_numbers_males, this->document.GetAllocator());
rapidjson::Value array5(rapidjson::kArrayType);
this->GenerateArrayObject(array5, fleet->catch_proportion_at_age_males, 3, fleet->years, fleet->seasons, fleet->ages);
expected_catch_proportions_males.AddMember("values", array5, this->document.GetAllocator());
males.AddMember("catch_proportion_at_age", expected_catch_proportions_males, this->document.GetAllocator());
rapidjson::Value array6(rapidjson::kArrayType);
this->GenerateArrayObject(array6, fleet->catch_biomass_at_age_males, 3, fleet->years, fleet->seasons, fleet->ages);
expected_catch_biomass_males.AddMember("units", "mt", this->document.GetAllocator());
expected_catch_biomass_males.AddMember("values", array6, this->document.GetAllocator());
males.AddMember("catch_biomass_at_age", expected_catch_biomass_males, this->document.GetAllocator());
rapidjson::Value array7(rapidjson::kArrayType);
this->GenerateArrayObject(array7, fleet->catch_biomass_total_males, 2, fleet->years, fleet->seasons, fleet->ages);
expected_catch_biomass_males_t.AddMember("units", "mt", this->document.GetAllocator());
expected_catch_biomass_males_t.AddMember("values", array7, this->document.GetAllocator());
males.AddMember("catch_biomass", expected_catch_biomass_males_t, this->document.GetAllocator());
popobject.AddMember("males", males, this->document.GetAllocator());
rapidjson::Value array9(rapidjson::kArrayType);
this->GenerateArrayObject(array9, fleet->catch_at_age, 3, fleet->years, fleet->seasons, fleet->ages);
expected_catch_numbers_total.AddMember("units", "1000 fish", this->document.GetAllocator());
expected_catch_numbers_total.AddMember("values", array9, this->document.GetAllocator());
undiff.AddMember("catch_at_age", expected_catch_numbers_total, this->document.GetAllocator());
rapidjson::Value array10(rapidjson::kArrayType);
this->GenerateArrayObject(array10, fleet->catch_proportion_at_age, 3, fleet->years, fleet->seasons, fleet->ages);
expected_catch_proportions_total.AddMember("values", array10, this->document.GetAllocator());
undiff.AddMember("catch_proportion_at_age", expected_catch_proportions_total, this->document.GetAllocator());
rapidjson::Value array11(rapidjson::kArrayType);
this->GenerateArrayObject(array11, fleet->catch_biomass_at_age, 3, fleet->years, fleet->seasons, fleet->ages);
expected_catch_biomas_totals.AddMember("units", "mt", this->document.GetAllocator());
expected_catch_biomas_totals.AddMember("values", array11, this->document.GetAllocator());
undiff.AddMember("catch_biomass_at_age", expected_catch_biomas_totals, this->document.GetAllocator());
rapidjson::Value array12(rapidjson::kArrayType);
this->GenerateArrayObject(array12, fleet->catch_biomass_total, 2, fleet->years, fleet->seasons, fleet->ages);
expected_catch_biomas_totals_t.AddMember("units", "mt", this->document.GetAllocator());
expected_catch_biomas_totals_t.AddMember("values", array12, this->document.GetAllocator());
undiff.AddMember("catch_biomass", expected_catch_biomas_totals_t, this->document.GetAllocator());
popobject.AddMember("undifferentiated", undiff, this->document.GetAllocator());
for (size_t i = 0; i < fleet->data_objects.size(); i++) {
rapidjson::Value obj(rapidjson::kObjectType);
if (fleet->data_objects[i]->type == mas::CATCH_BIOMASS) {
if (fleet->data_objects[i]->sex_type == mas::FEMALE) {
rapidjson::Value array(rapidjson::kArrayType);
this->GenerateArrayObject(array, fleet->data_objects[i], 2, fleet->years, fleet->seasons, fleet->ages);
obj.AddMember("sex", "females", this->document.GetAllocator());
obj.AddMember("values", array, this->document.GetAllocator());
observed.AddMember("fleet_biomass", obj, this->document.GetAllocator());
} else if (fleet->data_objects[i]->sex_type == mas::MALE) {
rapidjson::Value array(rapidjson::kArrayType);
this->GenerateArrayObject(array, fleet->data_objects[i], 2, fleet->years, fleet->seasons, fleet->ages);
obj.AddMember("sex", "males", this->document.GetAllocator());
obj.AddMember("values", array, this->document.GetAllocator());
observed.AddMember("fleet_biomass", obj, this->document.GetAllocator());
} else if (fleet->data_objects[i]->sex_type == mas::UNDIFFERENTIATED) {
rapidjson::Value array(rapidjson::kArrayType);
this->GenerateArrayObject(array, fleet->data_objects[i], 2, fleet->years, fleet->seasons, fleet->ages);
obj.AddMember("sex", "undifferentiated", this->document.GetAllocator());
obj.AddMember("values", array, this->document.GetAllocator());
observed.AddMember("fleet_biomass", obj, this->document.GetAllocator());