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Document and sim test recruitment dev_vector options #29
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comment from @RickMethot on 2018-04-19: Nearly everyone chooses option #1. If you choose option #2, then the mean dev can drift off of 0.0, resulting in the realized mean spawner-recruitment relationship being different from the relationship defined by B0 and h. So, if Johnoel cannot fix ADMB, I need to make recdev option #2 fully functional. Perhaps by adding a penalty in SS to keep the mean dev close to zero, Or we could come up with a completely different approach, as I know some of you have advocated in the past.
You can see these 4 stages of recruitment creation output in the Spawn_Recr section of report.sso. Given that the recdev vector is expected to be zero-centered, the logL for recruitment is then based entirely on that vector, sigmaR, and rho. ALTERNATIVE:
then these derived recdevs would serve as the basis for the logL of recruitment. |
closely related to #37 |
This issue really could use a simulation study to demonstrate the performance of the various options under MLE and MCMC. |
related to #37 |
Isn't there another dec_dev issue that shows this being implemented, but needing performance testing; e.g. a paper.? |
@Rick-Methot-NOAA , yes, we closed the other issue (#37) because it seemed to have more text about implementation of the option and we thought the performance testing was captured better by this open issue. |
Imported from redmine, Issue #49212
Opened by @RickMethot on 2018-05-11
Status when imported: In Progress
Find while working with Cole Monnahan that the dev_vector approach to the recruitment deviations does not perform well in mceval_phase().
Three alternatives:
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