forked from MIC-DKFZ/nnUNet
Result
Trọng Nghĩa edited this page Jan 14, 2022
·
23 revisions
Each model is trained with 5 folds. Here are the dimensions of our NIfTI images :
Image dimensions | 384 px | 384 px | 180 px |
---|---|---|---|
Image spacing | 0.6875 mm | 0.6875 mm | 0.6667 mm |
We are working with isotropic voxel dimensions
The different metrics are calculated using a tool coming along the nnUNet framework based upon medpy.
- Each cell contains 4 metrics: DSC | HD | HD95 | ASSD
- DSC: Dice Score
- HD: Hausdorff Distance [mm]
- HD95: Hausdorff Distance 95 percentile [mm]
Model - Class | 1 | 2 | 3 | 4 | 5 |
---|---|---|---|---|---|
3D cascade | 0.932 | 0.888 | 0.911 | 0.778 | 0.949 |
3D fullres | 0.942 | 0.911 | 0.922 | 0.779 | 0.961 |
2D | 0.909 | 0.887 | 0.881 | 0.705 | 0.924 |
2D - RMS prop | 0.906 | 0.881 | 0.878 | 0.711 | 0.919 |
TransUNet2D | 0.909 | 0.882 | 0.879 | 0.692 | 0.921 |
TransUNet3D | 0.932 | 0.893 | 0.912 | 0.774 | 0.946 |
Model - Class | 1 | 2 | 3 | 4 | 5 |
---|---|---|---|---|---|
3D cascade | 11.35 | 2.56 | 9.64 | 3.39 | 14.41 | 4.08 | 11.78 | 5.94 | 14.85 | 2.31 |
3D fullres | 09.17 | 1.93 | 8.07 | 2.47 | 10.02 | 3.54 | 12.83 | 06.68 | 08.93 | 01.63 |
2D | 11.19 | 3.00 | 11.00 | 2.97 | 21.60 | 5.06 | 14.68 | 8.11 | 21.34 | 3.41 |
2D - RMS prop | 19.59 | 3.29 | 13.27 | 3.75 | 28.12 | 6.82 | 16.62 | 8.60 | 54.40 | 5.56 |
TransUNet2D | 14.98 | 3.42 | 8.25 | 3.21 | 15.70 | 5.61 | 16.53 | 8.72 | 20.42 | 3.57 |
TransUNet3D | 12.23 | 2.61 | 9.78 | 3.42 | 14.39 | 4.08 | 14.45 | 7.31 | 14.59 | 2.41 |
model | class1 | class2 | class3 | class4 | class5 | average |
---|---|---|---|---|---|---|
2d | 0.8962 | 0.8500 | 0.8839 | 0.7623 | 0.9250 | 0.8635 |
3d_fullres | 0.9395 | 0.8843 | 0.9279 | 0.8091 | 0.9567 | 0.9035 |
3d_cascade_fullres | 0.9107 | 0.8515 | 0.9095 | 0.7623 | 0.9461 | 0.8760 |
TransUNet2D | 0.9077 | 0.8433 | 0.9012 | 0.7382 | 0.9389 | 0.8658 |
TransUNet3D | 0.9117 | 0.8563 | 0.9094 | 0.7661 | 0.9466 | 0.8780 |
2d--3d_fullres | 0.9244 | 0.8712 | 0.9114 | 0.7938 | 0.9458 | 0.8893 |
2d--3d_cascade_fullres | 0.9189 | 0.8663 | 0.9085 | 0.7843 | 0.9426 | 0.8841 |
2d--TransUNet2D | 0.9116 | 0.8470 | 0.9042 | 0.7441 | 0.9416 | 0.8697 |
2d--TransUNet3D | 0.9172 | 0.8613 | 0.9123 | 0.7719 | 0.9489 | 0.8823 |
3d_fullres--3d_cascade_fullres | 0.9347 | 0.8805 | 0.9243 | 0.7964 | 0.9550 | 0.8982 |
3d_fullres--TransUNet2D | 0.9140 | 0.8488 | 0.9055 | 0.7457 | 0.9437 | 0.8715 |
3d_fullres--TransUNet3D | 0.9199 | 0.8637 | 0.9138 | 0.7751 | 0.9511 | 0.8847 |
3d_cascade_fullres--TransUNet2D | 0.9099 | 0.8465 | 0.9035 | 0.7426 | 0.9412 | 0.8688 |
3d_cascade_fullres--TransUNet3D | 0.9126 | 0.8573 | 0.9107 | 0.7682 | 0.9476 | 0.8793 |
TransUNet2D--TransUNet3D | 0.9139 | 0.8572 | 0.9097 | 0.7620 | 0.9456 | 0.8777 |