add SCHISM support #93

ghost · 2021-04-29T19:48:22Z

No description provided.

ghost · 2021-05-06T15:01:04Z

when testing, I get the following error:

tests/test_configuration.py:None (tests/test_configuration.py)
tests\test_configuration.py:6: in <module>
    from pyschism import ModelDomain, ModelDriver, Stations
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\__init__.py:4: in <module>
    from pyschism.param import Param
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\param\__init__.py:1: in <module>
    from pyschism.param.param import Param
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\param\param.py:8: in <module>
    from pyschism.domain import ModelDomain
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\domain.py:8: in <module>
    from pyschism.forcing.tides.bctypes import BoundaryCondition
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\forcing\__init__.py:2: in <module>
    from pyschism.forcing.atmosphere import GlobalForecastSystem
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\forcing\atmosphere\__init__.py:1: in <module>
    from pyschism.forcing.atmosphere import nws
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\forcing\atmosphere\nws\__init__.py:2: in <module>
    from pyschism.forcing.atmosphere.nws import nws2
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\forcing\atmosphere\nws\nws2\__init__.py:1: in <module>
    from pyschism.forcing.atmosphere.nws.nws2.nws2 import NWS2
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\forcing\atmosphere\nws\nws2\nws2.py:10: in <module>
    from pyschism.forcing.atmosphere.nws.nws2.sflux import SfluxDataset
C:\Environments\CoupledModelDriver\lib\site-packages\pyschism-0.0.11-py3.8.egg\pyschism\forcing\atmosphere\nws\nws2\sflux.py:9: in <module>
    import cf
C:\Environments\CoupledModelDriver\lib\site-packages\cf_python-3.8.0-py3.8.egg\cf\__init__.py:155: in <module>
    import cfunits
C:\Environments\CoupledModelDriver\lib\site-packages\cfunits\__init__.py:46: in <module>
    from .units import Units
C:\Environments\CoupledModelDriver\lib\site-packages\cfunits\units.py:232: in <module>
    assert(0 == _ut_unmap_symbol_to_unit(_ut_system, _c_char_p(b'Sv'), _UT_ASCII))
E   AssertionError

# Conflicts: # coupledmodeldriver/generate/adcirc/base.py # coupledmodeldriver/generate/adcirc/generate.py # coupledmodeldriver/generate/adcirc/script.py # tests/data/reference/adcirc/hera_shinnecock_ike/configure_adcirc.json # tests/data/reference/adcirc/hera_shinnecock_ike/runs/unperturbed/fort.15 # tests/data/reference/adcirc/hera_shinnecock_ike/spinup/fort.15 # tests/data/reference/adcirc/hera_shinnecock_ike_nospinup/configure_adcirc.json # tests/data/reference/adcirc/hera_shinnecock_ike_nospinup/runs/unperturbed/adcprep.job # tests/data/reference/adcirc/hera_shinnecock_ike_nospinup/runs/unperturbed/fort.15 # tests/data/reference/adcirc/local_shinnecock_ike/configure_adcirc.json # tests/data/reference/adcirc/local_shinnecock_ike/runs/unperturbed/fort.15 # tests/data/reference/adcirc/local_shinnecock_ike/spinup/fort.15 # tests/data/reference/adcirc/stampede2_shinnecock_ike/configure_adcirc.json # tests/data/reference/adcirc/stampede2_shinnecock_ike/runs/unperturbed/fort.15 # tests/data/reference/adcirc/stampede2_shinnecock_ike/spinup/fort.15 # tests/data/reference/nems_adcirc/hera_shinnecock_ike/config.rc.coldstart # tests/data/reference/nems_adcirc/hera_shinnecock_ike/config.rc.hotstart # tests/data/reference/nems_adcirc/hera_shinnecock_ike/configure_adcirc.json # tests/data/reference/nems_adcirc/hera_shinnecock_ike/job_adcprep_hera.job # tests/data/reference/nems_adcirc/hera_shinnecock_ike/model_configure.coldstart # tests/data/reference/nems_adcirc/hera_shinnecock_ike/model_configure.hotstart # tests/data/reference/nems_adcirc/hera_shinnecock_ike/nems.configure.coldstart # tests/data/reference/nems_adcirc/hera_shinnecock_ike/nems.configure.hotstart # tests/data/reference/nems_adcirc/hera_shinnecock_ike/runs/unperturbed/adcprep.job # tests/data/reference/nems_adcirc/hera_shinnecock_ike/runs/unperturbed/config.rc # tests/data/reference/nems_adcirc/hera_shinnecock_ike/runs/unperturbed/fort.15 # tests/data/reference/nems_adcirc/hera_shinnecock_ike/runs/unperturbed/model_configure # tests/data/reference/nems_adcirc/hera_shinnecock_ike/runs/unperturbed/nems.configure # tests/data/reference/nems_adcirc/hera_shinnecock_ike/spinup/adcprep.job # tests/data/reference/nems_adcirc/hera_shinnecock_ike/spinup/config.rc # tests/data/reference/nems_adcirc/hera_shinnecock_ike/spinup/fort.15 # tests/data/reference/nems_adcirc/hera_shinnecock_ike/spinup/model_configure # tests/data/reference/nems_adcirc/hera_shinnecock_ike/spinup/nems.configure # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/config.rc.coldstart # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/configure_adcirc.json # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/job_adcprep_hera.job # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/model_configure.coldstart # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/nems.configure.coldstart # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/runs/unperturbed/adcprep.job # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/runs/unperturbed/config.rc # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/runs/unperturbed/fort.15 # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/runs/unperturbed/model_configure # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/runs/unperturbed/nems.configure # tests/data/reference/nems_adcirc/local_shinnecock_ike/config.rc.coldstart # tests/data/reference/nems_adcirc/local_shinnecock_ike/config.rc.hotstart # tests/data/reference/nems_adcirc/local_shinnecock_ike/configure_adcirc.json # tests/data/reference/nems_adcirc/local_shinnecock_ike/model_configure.coldstart # tests/data/reference/nems_adcirc/local_shinnecock_ike/model_configure.hotstart # tests/data/reference/nems_adcirc/local_shinnecock_ike/nems.configure.coldstart # tests/data/reference/nems_adcirc/local_shinnecock_ike/nems.configure.hotstart # tests/data/reference/nems_adcirc/local_shinnecock_ike/runs/unperturbed/config.rc # tests/data/reference/nems_adcirc/local_shinnecock_ike/runs/unperturbed/fort.15 # tests/data/reference/nems_adcirc/local_shinnecock_ike/runs/unperturbed/model_configure # tests/data/reference/nems_adcirc/local_shinnecock_ike/runs/unperturbed/nems.configure # tests/data/reference/nems_adcirc/local_shinnecock_ike/spinup/config.rc # tests/data/reference/nems_adcirc/local_shinnecock_ike/spinup/fort.15 # tests/data/reference/nems_adcirc/local_shinnecock_ike/spinup/model_configure # tests/data/reference/nems_adcirc/local_shinnecock_ike/spinup/nems.configure # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/config.rc.coldstart # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/config.rc.hotstart # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/configure_adcirc.json # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/model_configure.coldstart # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/model_configure.hotstart # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/nems.configure.coldstart # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/nems.configure.hotstart # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/runs/unperturbed/adcprep.job # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/runs/unperturbed/config.rc # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/runs/unperturbed/fort.15 # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/runs/unperturbed/model_configure # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/runs/unperturbed/nems.configure # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/spinup/adcprep.job # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/spinup/config.rc # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/spinup/fort.15 # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/spinup/model_configure # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/spinup/nems.configure

# Conflicts: # tests/test_utilities.py

# Conflicts: # examples/nems_adcirc/hera_hsofs120m_sandy_spinup_tidal_atmesh_ww3data.py # examples/nems_adcirc/hera_shinnecock_ike_spinup_tidal_atmesh_ww3data_perturbed_mannings_n.py # setup.py

# Conflicts: # coupledmodeldriver/configure/base.py # coupledmodeldriver/configure/configure.py # coupledmodeldriver/generate/adcirc/generate.py # setup.py # tests/data/reference/adcirc/hera_shinnecock_ike/job_adcirc_hera.job.hotstart # tests/data/reference/adcirc/hera_shinnecock_ike/job_adcirc_hera.job.spinup # tests/data/reference/adcirc/hera_shinnecock_ike/job_setup_hera.job # tests/data/reference/adcirc/hera_shinnecock_ike/runs/unperturbed/adcirc.job # tests/data/reference/adcirc/hera_shinnecock_ike/runs/unperturbed/setup.job # tests/data/reference/adcirc/hera_shinnecock_ike/spinup/adcirc.job # tests/data/reference/adcirc/hera_shinnecock_ike/spinup/setup.job # tests/data/reference/adcirc/hera_shinnecock_ike_nospinup/job_adcirc_hera.job.coldstart # tests/data/reference/adcirc/hera_shinnecock_ike_nospinup/job_setup_hera.job # tests/data/reference/adcirc/hera_shinnecock_ike_nospinup/runs/unperturbed/adcirc.job # tests/data/reference/adcirc/local_shinnecock_ike/job_adcirc_local.job.hotstart # tests/data/reference/adcirc/local_shinnecock_ike/job_adcirc_local.job.spinup # tests/data/reference/adcirc/local_shinnecock_ike/job_setup_local.job # tests/data/reference/adcirc/local_shinnecock_ike/runs/unperturbed/adcirc.job # tests/data/reference/adcirc/local_shinnecock_ike/runs/unperturbed/setup.job # tests/data/reference/adcirc/local_shinnecock_ike/spinup/adcirc.job # tests/data/reference/adcirc/local_shinnecock_ike/spinup/setup.job # tests/data/reference/adcirc/stampede2_shinnecock_ike/job_adcirc_stampede2.job.hotstart # tests/data/reference/adcirc/stampede2_shinnecock_ike/job_adcirc_stampede2.job.spinup # tests/data/reference/adcirc/stampede2_shinnecock_ike/job_setup_stampede2.job # tests/data/reference/adcirc/stampede2_shinnecock_ike/runs/unperturbed/adcirc.job # tests/data/reference/adcirc/stampede2_shinnecock_ike/runs/unperturbed/setup.job # tests/data/reference/adcirc/stampede2_shinnecock_ike/spinup/adcirc.job # tests/data/reference/adcirc/stampede2_shinnecock_ike/spinup/setup.job # tests/data/reference/nems_adcirc/hera_shinnecock_ike/configure_atmesh.json # tests/data/reference/nems_adcirc/hera_shinnecock_ike/configure_ww3data.json # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/configure_atmesh.json # tests/data/reference/nems_adcirc/hera_shinnecock_ike_nospinup/configure_ww3data.json # tests/data/reference/nems_adcirc/local_shinnecock_ike/configure_atmesh.json # tests/data/reference/nems_adcirc/local_shinnecock_ike/configure_ww3data.json # tests/data/reference/nems_adcirc/local_shinnecock_ike/job_setup_local.job # tests/data/reference/nems_adcirc/local_shinnecock_ike/runs/unperturbed/setup.job # tests/data/reference/nems_adcirc/local_shinnecock_ike/spinup/setup.job # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/configure_atmesh.json # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/configure_ww3data.json # tests/data/reference/nems_adcirc/stampede2_shinnecock_ike/job_setup_stampede2.job # tests/test_configuration.py

boilerplate SCHISM code

6ada23d

ghost self-assigned this Apr 29, 2021

ghost added the enhancement New feature or request label Apr 29, 2021

ghost mentioned this pull request Apr 29, 2021

enumerate SCHISM configuration options #94

Open

zacharyburnett added 4 commits May 3, 2021 15:46

use pyschism

6afcd5f

enumerate SCHISM driver options in configuration

c2bc154

Merge branch 'main' into feature/schism

605a34a

pyschism integration

529fe92

ghost mentioned this pull request May 6, 2021

AssertionError when importing cf and cfunits schism-dev/pyschism#21

Closed

ghost linked an issue May 12, 2021 that may be closed by this pull request

enumerate SCHISM configuration options #94

Open

zacharyburnett added 6 commits May 26, 2021 15:46

Merge branch 'main' into feature/schism

f4460c0

# Conflicts: # tests/test_utilities.py

Merge branch 'main' into feature/schism

dbc09f3

# Conflicts: # examples/nems_adcirc/hera_hsofs120m_sandy_spinup_tidal_atmesh_ww3data.py # examples/nems_adcirc/hera_shinnecock_ike_spinup_tidal_atmesh_ww3data_perturbed_mannings_n.py # setup.py

move CLI client into module

06c3a56

Merge branch 'main' into feature/schism

8a089b2

more SCHISM implementation

e6c1385

ghost closed this Apr 20, 2022

ghost deleted the feature/schism branch April 20, 2022 18:39

This pull request was closed.

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add SCHISM support #93

add SCHISM support #93

ghost commented Apr 29, 2021

ghost commented May 6, 2021

add SCHISM support #93

add SCHISM support #93

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ghost commented Apr 29, 2021

ghost commented May 6, 2021