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removed deprecated dependency on archive.m_context
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Bernadette Mohr committed Jun 19, 2024
1 parent 7e2734d commit aa3325d
Showing 1 changed file with 4 additions and 5 deletions.
9 changes: 4 additions & 5 deletions atomisticparsers/gromacs/parser.py
Original file line number Diff line number Diff line change
Expand Up @@ -1452,11 +1452,10 @@ def parse_workflow(self):
)
sec_fe = self.archive.workflow2.results.free_energy_calculations[0]
sec_fe.method_ref = sec_fe_parameters
if self.archive.m_context:
sec_fe.value_total_energy_magnitude = columns[:, 0]
sec_fe.value_total_energy_derivative_magnitude = columns[:, 1]
sec_fe.value_total_energy_differences_magnitude = columns[:, 2:-1]
sec_fe.value_PV_energy_magnitude = columns[:, -1]
sec_fe.value_total_energy_magnitude = columns[:, 0]
sec_fe.value_total_energy_derivative_magnitude = columns[:, 1]
sec_fe.value_total_energy_differences_magnitude = columns[:, 2:-1]
sec_fe.value_PV_energy_magnitude = columns[:, -1]

def parse_input(self):
sec_run = self.archive.run[-1]
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