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iosonofabio committed May 31, 2020
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Expand Up @@ -82,7 +82,7 @@ cells, genes as columns):
`CellType` that describes for each cell its cell type.
- If you plan to use the `Averages` class, the `AnnData` must have an `obs` column called `NumberOfCells` that is used to weight each cell type in the PCA. A value of 20 for all cell types is typical.

Create an atlas from an existing dataset
Alternative: custom atlas
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`northstar` provides a function to subsample an existing annotated dataset to small cell numbers within each cell type, ready for further use with the `Subsample` class. You data must be in an `AnnData` object. You can call it by:

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