add dockerfile

Dockerfile

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+# Use the offical golang image to create a binary.
+# This is based on Debian and sets the GOPATH to /go.
+# https://hub.docker.com/_/golang
+FROM golang:1.16-buster as builder
+
+# Create and change to the app directory.
+WORKDIR /app
+
+# Retrieve application dependencies.
+# This allows the container build to reuse cached dependencies.
+# Expecting to copy go.mod and if present go.sum.
+COPY H2_script.R ./
+COPY strain_data.tsv ./
+COPY go.* ./
+RUN go mod download
+
+# Copy local code to the container image.
+COPY . ./
+
+# Build the binary.
+RUN go build -v -o server
+
+
+# build the deployed image
+FROM continuumio/miniconda3
+
+RUN apt-get update && apt-get install -y procps && \
+    apt-get clean
+RUN conda config --add channels defaults && \
+    conda config --add channels bioconda && \
+    conda config --add channels conda-forge
+RUN conda create -n heritability \
+    conda-forge::go=1.16.3 \
+    r=3.6.0 \
+    r-lme4 \
+    r-dplyr \
+    r-tidyr \
+    r-glue \
+    r-boot \
+    r-data.table \
+    r-futile.logger \
+    && conda clean -a
+
+LABEL Name="heritability" Author="Daniel Cook"
+ENV PATH /opt/conda/envs/heritability/bin:$PATH
+WORKDIR /app
+
+# Copy local code to the container image.
+COPY --from=builder /app/H2_script.R /app/H2_script.R
+COPY --from=builder /app/strain_data.tsv /app/strain_data.tsv
+COPY --from=builder /app/server /app/server
+
+# Run the web service on container startup.
+CMD ["/app/server"]

README.md

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+# This directory contains the code to start the Google Cloud Run Microservice for the Heritability Tool
+
+Build using:
+
+gcloud config set project andersen-lab
+gcloud builds submit --config cloudbuild.yaml . --timeout=3h
+gcloud run deploy --image gcr.io/andersen-lab/h2-1 --memory 1024Mi --platform managed h2-1 --timeout=15m