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  • Peax is a tool for interactive concept learning and exploration of epigenomic patterns based on unsupervised featurization with autoencoders

    Jupyter Notebook 11 2 Updated Apr 19, 2019
  • Open-source Data Ops

    JavaScript 63 14 Apache-2.0 Updated Mar 29, 2019
  • Exploratory Graphics for PKPD data

    HTML 1 Updated Mar 5, 2019
  • Processed data relating to Continuous monitoring of patient mobility for 18 months using inertial sensors following traumatic knee injury: a case study Mueller A., Hoefling H., Nuritdinow T., et al. Paper: Raw data:

    1 Apache-2.0 Updated Oct 3, 2018
  • Monolix identifiability assessment R package for generating likelihood profiles (LLPs) and likelihood waterfalls (LLW) using Batchtools for parallelization.

    Updated Sep 28, 2018
  • Iba1+ cells in the PEC are generally sparsely distributed around the posterior eye cup, but manual quantification of these cells is time consuming. Therefore we developed a second semi-automated MatLab code to quantify single Iba1+ cells. The operator is presented with masked, randomized images and allowed to remove non-specific fluorescence (fa…

    MATLAB Apache-2.0 Updated Sep 24, 2018
  • Confluent and overlapping cells are difficult to quantify in low power images. This MatLab code allows a user to analyze the pixel intensity (integrated density) over a region of interest (ROI) in low power images as a surrogate for cell number. This code was optimized for use in our Choroidal Neovascularization model, and allows for the analysi…

    MATLAB Apache-2.0 Updated Sep 24, 2018
  • OntoBrowser is a web-based application for managing ontologies

    Java 7 3 Apache-2.0 Updated Apr 30, 2018
  • An ontology of histopathological morphologies

    4 Apache-2.0 Updated Apr 24, 2018
  • Jenkins jobs that support a variety of life science applications (data management, data transformations, analysis, computational workflows etc.)

    Groovy Apache-2.0 Updated Mar 29, 2018
  • YADA is like a Universal Remote Control for data.

    HTML 1 Apache-2.0 Updated Feb 12, 2018
  • Project Mona Lisa (PML): Machine-learning Assisted Diagramming Platform

    JavaScript 2 1 Apache-2.0 Updated Oct 17, 2017
  • C 1 11 Apache-2.0 Updated Sep 29, 2017
  • JavaScript 1 Apache-2.0 Updated Aug 18, 2017
  • Jenkins for Life Science Continuous Integration

    Groovy 9 3 Updated Apr 28, 2017
  • High throughput, pain-free big data pipelines.

    Python 29 7 Apache-2.0 Updated Mar 11, 2017
  • JavaScript 2 1 Apache-2.0 Updated Sep 27, 2016
  • Unix based RNA-seq quantification module

    Java 3 Apache-2.0 Updated May 6, 2016
  • "Where files live" - Simple object management system using AWS S3 and Elasticsearch Service to manage objects and their metadata

    Python 5 3 Apache-2.0 Updated May 4, 2016
  • Script and example data for "Evidence-Based and Quantitative Prioritization of Tool Compounds in Phenotypic Drug Discovery"

    R 5 1 Apache-2.0 Updated Apr 29, 2016
  • Unix-based RNA-seq quantification pipeline

    Java 10 2 Apache-2.0 Updated Nov 18, 2015
  • Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.

    Python 12 Apache-2.0 Updated Jun 22, 2015
  • GridVar is a jQuery plugin that visualizes multi-dimensional datasets as layers organized in a row-column format.

    JavaScript 13 7 Updated Feb 21, 2014
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