v0.1internal release, no tests
Druid is a fork of the hybrid neural net platform for training, evaluating and deploying neural network models that originally act as taxonomic classifiers of raw nanopore signal (Achilles). It reimplements the basecaller function of Chiron as a Keras model with the specific purpose to detect non canonical base modifications.
pip install git+https://github.com/esteinig/druid # does not install tensorflow-gpu or keras
PoreMongo dependency, which can for now be installed with:
pip install git+https://github.com/esteinig/poremongo
Coming soon.
- Eike Steinig
- Lachlan Coin