P4 tool not grouping according to the paper!!

[09Raghu09]

Hi Nathan,

I would like to highlight that in your paper named "Nonstationary Evolution and Compositional Heterogeneity in Beetle
Mitochondrial Phylogenomics" you had plotted p4 results saying it groups according to the AT%. When I tried to run p4 with the dataset which you had included in the supplementary, It didn't group and the result obtained was different when I plotted for the same. It would be really helpful if you can give me a clarification. Maybe I missed something unlike you while p4 run. Could you please give a look and respond.