Notebook to access, download and plot GeoTIFFs using MEaSUREs data sets as examples #121
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test Notebooks | |
| on: | |
| pull_request: | |
| paths: | |
| - notebooks/** | |
| - binder/** | |
| - '.github/workflows/' | |
| types: [opened, synchronize] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| linux: | |
| name: Linux tests | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: "Install Conda environment with Micromamba" | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| cache-env: true | |
| environment-file: binder/environment.yml | |
| environment-name: nsidc-tutorials | |
| - name: "Verify micromamba" | |
| shell: bash -l {0} | |
| run: | | |
| micromamba info | |
| jupyter kernelspec list | |
| which python | |
| conda list | sort | |
| - name: "List updated notebooks" | |
| id: changed-files | |
| uses: tj-actions/changed-files@v36 | |
| with: | |
| # since_last_remote_commit: true | |
| separator: "\n" | |
| files: | | |
| **/*.ipynb | |
| files_ignore: | | |
| **/*endered*.ipynb | |
| - name: "Verify that libraries used in notebooks are present in the environment" | |
| if: steps.changed-files.outputs.any_changed == 'true' | |
| shell: bash -l {0} | |
| run: | | |
| find notebooks -type f -iname \*.ipynb -not -path '*\.ipynb_checkpoints/*' -not -path '*/iceflow/*' | xargs -I % python .github/workflows/scan_notebooks.py -n % | |
| - name: "Setup Quarto" | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| version: 1.1.251 | |
| - name: "Execute notebooks with Quarto" | |
| if: steps.changed-files.outputs.any_changed == 'true' | |
| env: | |
| EARTHDATA_USERNAME: ${{ secrets.EARTHDATA_USERNAME }} | |
| EARTHDATA_PASSWORD: ${{ secrets.EARTHDATA_PASSWORD }} | |
| shell: bash -l {0} | |
| run: | | |
| echo "Notebooks to execute: ${{ steps.changed-files.outputs.all_changed_files }}" | |
| echo -e ${{ steps.changed-files.outputs.all_changed_files }} | xargs -I F quarto render "F" --execute --execute-daemon | |
| win-osx: | |
| name: Runtime (${{ matrix.os }}, micromamba) | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["windows", "macos"] | |
| include: | |
| - os: windows | |
| environment-file: binder/conda-win-64.lock | |
| - os: macos | |
| environment-file: binder/conda-osx-64.lock | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: "Install Conda environment with Micromamba" | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| cache-env: true | |
| environment-file: ${{ matrix.environment-file }} | |
| environment-name: nsidc-tutorials | |
| - name: "Verify micromamba" | |
| shell: bash -l {0} | |
| run: | | |
| micromamba info | |
| jupyter kernelspec list | |
| printenv | sort |