Relax bloptools pin
#91
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: package_env | |
| on: | |
| push: | |
| # pull_request: | |
| jobs: | |
| generate_conda_packd_envs: | |
| name: conda-pack'd env with Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| fail-fast: false | |
| env: | |
| TZ: America/New_York | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Set env vars | |
| run: | | |
| export REPOSITORY_NAME=${GITHUB_REPOSITORY#*/} # just the repo, as opposed to org/repo | |
| echo "REPOSITORY_NAME=${REPOSITORY_NAME}" >> $GITHUB_ENV | |
| export DATETIME_STRING=$(date +%Y%m%d%H%M%S) | |
| echo "DATETIME_STRING=${DATETIME_STRING}" >> $GITHUB_ENV | |
| - name: Set non-secret environment variables | |
| run: | | |
| export PYTHONVER=$(echo ${{ matrix.python-version }} | sed 's/\.//g') | |
| echo "PYTHONVER=${PYTHONVER}" >> $GITHUB_ENV | |
| export CONDA_PACK_TEMPLATE_DIR=${HOME}/conda-pack-template | |
| echo "CONDA_PACK_TEMPLATE_DIR=${CONDA_PACK_TEMPLATE_DIR}" >> $GITHUB_ENV | |
| - name: checkout the code | |
| uses: actions/checkout@v3 | |
| - name: checkout NSLS-II/conda-pack-template | |
| run: | | |
| git clone https://github.com/NSLS-II/conda-pack-template ${CONDA_PACK_TEMPLATE_DIR} | |
| cd ${CONDA_PACK_TEMPLATE_DIR} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: ${{ env.REPOSITORY_NAME }} | |
| auto-update-conda: true | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| - name: pip-install dependencies | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeuo pipefail | |
| python3 -m pip install -r ${CONDA_PACK_TEMPLATE_DIR}/requirements.txt | |
| python3 -m pip install shyaml | |
| - name: pip-install dev-dependencies | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeuo pipefail | |
| python3 -m pip install -r ${CONDA_PACK_TEMPLATE_DIR}/requirements-dev.txt | |
| - name: check env | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeuo pipefail | |
| conda info | |
| conda env list | |
| conda list | |
| pip list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: render config | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeuo pipefail | |
| env_name=$(cat configs/config-py${PYTHONVER}.yml | shyaml get-value env_name) | |
| export CONDA_PACK_ENV_NAME="${env_name}" | |
| echo "CONDA_PACK_ENV_NAME=${CONDA_PACK_ENV_NAME}" >> $GITHUB_ENV | |
| dockerfile=$(python3 ${CONDA_PACK_TEMPLATE_DIR}/render.py -c configs/config-py${PYTHONVER}.yml -f Dockerfile.j2) | |
| runner=$(python3 ${CONDA_PACK_TEMPLATE_DIR}/render.py -c configs/config-py${PYTHONVER}.yml -f runner.sh.j2) | |
| echo "${dockerfile}" | |
| echo "${runner}" | |
| ls -la | |
| cat "${dockerfile}" | |
| cat "${runner}" | |
| export CONDA_PACK_TEMPLATE_RUNNER="${runner}" | |
| echo "CONDA_PACK_TEMPLATE_RUNNER=${CONDA_PACK_TEMPLATE_RUNNER}" >> $GITHUB_ENV | |
| - name: run a build with Docker/Podman | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeo pipefail | |
| cp -v ${CONDA_PACK_TEMPLATE_DIR}/export.sh . | |
| bash ${CONDA_PACK_TEMPLATE_RUNNER} | |
| ls -laF | |
| cp -v Dockerfile ${CONDA_PACK_TEMPLATE_RUNNER} artifacts/ | |
| sudo chown -v $USER: artifacts/* | |
| ls -laF artifacts/ | |
| - name: contents of the env .yml file | |
| run: | | |
| cat artifacts/${CONDA_PACK_ENV_NAME}.yml | |
| - name: checksum files | |
| run: | | |
| cat artifacts/*sum.txt | |
| # https://github.com/actions/upload-artifact | |
| - name: upload artifacts for branch | |
| if: | | |
| github.ref != 'refs/heads/main' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-${{ env.CONDA_PACK_ENV_NAME }}-${{ env.DATETIME_STRING }} | |
| path: artifacts | |
| retention-days: 14 | |
| - name: upload artifacts for release | |
| if: | | |
| github.ref == 'refs/heads/main' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.CONDA_PACK_ENV_NAME }} | |
| path: artifacts | |
| retention-days: 60 | |
| - name: upload artifacts for the env .yml file | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.CONDA_PACK_ENV_NAME }}.yml | |
| path: artifacts/${{ env.CONDA_PACK_ENV_NAME}}.yml | |
| retention-days: 60 |