-
Notifications
You must be signed in to change notification settings - Fork 4
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #26 from nsls2-conda-envs/2023-3.3
2023-3.3 envs
- Loading branch information
Showing
5 changed files
with
245 additions
and
5 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| docker_image: "quay.io/condaforge/linux-anvil-cos7-x86_64:latest" | ||
| env_name: "2023-3.3-py311" | ||
| conda_env_file: "env-py311.yml" | ||
| conda_binary: "mamba" | ||
| python_version: "3.11" | ||
| pkg_name: "" | ||
| pkg_version: "" | ||
| extra_packages: "mamba" | ||
| channels: "-c conda-forge" | ||
| extra_cmd_before_install: "yum install mesa-libGL -y" | ||
| extra_cmd_after_install: "conda remove perl --force -y" | ||
| docker_upload: | ||
| - ghcr | ||
| - dockerhub | ||
| # - quay | ||
| zenodo_upload: "no" | ||
| zenodo_metadata: | ||
| metadata: | ||
| title: "NSLS-II collection conda environment" | ||
| upload_type: "software" | ||
| description: "NSLS-II collection conda environment" | ||
| version: 2023-3.3 | ||
| creators: | ||
| - name: Rakitin, Max | ||
| affiliation: "Brookhaven National Laboratory" | ||
| - name: Bischof, Garrett | ||
| affiliation: "Brookhaven National Laboratory" |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,213 @@ | ||
| name: 2023-3.3-py311 | ||
| channels: | ||
| - conda-forge | ||
| dependencies: | ||
| #***************************************************************************# | ||
| # # | ||
| # Dependencies from the `nsls2-analysis` metapackage # | ||
| # # | ||
| #***************************************************************************# | ||
| - python >=3.11,<3.12 | ||
| - algotom | ||
| - amostra <=1.0 | ||
| - ansiwrap | ||
| - area-detector-handlers >=0.0.9 | ||
| - arvpyf | ||
| - attrs >=18.0 | ||
| - awkward | ||
| - black | ||
| - bluesky ==1.10.0 | ||
| - bluesky-adaptive >=0.3.1 | ||
| - bluesky-kafka >=0.10.0 | ||
| - bluesky-live >=0.0.8 | ||
| - bluesky-queueserver >=0.0.19 | ||
| - bluesky-queueserver-api >=0.0.10 | ||
| - bluesky-widgets >=0.0.15 | ||
| - bokeh | ||
| - boto3 | ||
| - bottleneck | ||
| - chxtools | ||
| - cmasher | ||
| - conda-pack | ||
| - csxtools >=0.2.1 | ||
| - dash | ||
| - dash-bootstrap-components | ||
| - dask | ||
| - dask-image | ||
| - dask-jobqueue | ||
| - dask-ml | ||
| - dask-xgboost | ||
| - databroker >=1.2.5,<2.0.0a | ||
| - databroker-pack | ||
| - dictdiffer | ||
| - discorpy | ||
| - distributed | ||
| - doi2bib | ||
| - dpcmaps | ||
| # - edrixs # conflicts caused by the latest numexpr, to resolve later. | ||
| - eiger-io | ||
| - event-model >=1.19.2 | ||
| - fabio | ||
| - ffmpeg >=4.0 | ||
| - flake8 | ||
| - globus-sdk | ||
| - graphviz | ||
| - grid-strategy | ||
| - h5py !=3.4 | ||
| - hdf5-external-filter-plugins-bitshuffle | ||
| - hdf5-external-filter-plugins-lz4 | ||
| - historydict | ||
| - hvplot | ||
| - hxntools >=0.6.1 | ||
| - igor | ||
| - imageio | ||
| - inflection | ||
| - intake <=0.6.4 | ||
| - ipykernel | ||
| - ipympl >=0.1.1 | ||
| - ipython >=7.20.0 | ||
| - ipywidgets >=7.2.1 | ||
| - isort | ||
| - ispyb | ||
| - isstools | ||
| - jedi | ||
| - jupyter | ||
| - jupyterlab | ||
| - legacy-suitcase | ||
| - lixtools | ||
| - lmfit | ||
| - lxml | ||
| - matplotlib >=3.6.2 | ||
| - memory_profiler | ||
| - mendeleev | ||
| - modestimage | ||
| - mxtools >=1.0.3 | ||
| - napari >=0.4.17 | ||
| - natsort | ||
| - netcdf4 | ||
| - nexpy >=0.14.8 | ||
| - nodejs | ||
| - nsls2-detector-handlers >=0.0.3 | ||
| - nslsii >=0.9.1 | ||
| - numexpr >=2.8.0 | ||
| - numpy >=1.20 | ||
| - nyxtools >=0.0.12 | ||
| - oct2py | ||
| - opencv | ||
| - openmpi >=4.1.4 | ||
| - ophyd >=1.8.0 | ||
| # pandas and deps | ||
| - pandas | ||
| - openpyxl # used by pandas .to_excel() | ||
| - pyarrow # used by pandas .to_parquet() | ||
| - pytables # used by pandas .to_hdf() | ||
| # end of pandas deps | ||
| - papermill | ||
| - pdfstream ==0.5.2 # same as in the 2022-2.0-py37 env, https://zenodo.org/records/6462525/files/2022-2.0-py37.yml | ||
| - peakutils | ||
| - periodictable | ||
| - photutils | ||
| - pillow | ||
| - pocl # needed by pyopencl, used by the `xrt` package | ||
| - pre-commit | ||
| - prefect | ||
| - py-xgboost | ||
| - py4xs | ||
| - pycentroids | ||
| - pyepics >=3.4.2 | ||
| - pyfai | ||
| - pyfftw | ||
| - pymatgen >=2023.6.28 | ||
| - pymca | ||
| - pymcr | ||
| - pymongo >=3.7 | ||
| - pypdf2 | ||
| - pyqt >=5.15.0 | ||
| - pyqtgraph | ||
| - pystackreg | ||
| - python-blosc | ||
| - python-graphviz | ||
| - pyxrf >=1.0.24 | ||
| - pyzbar | ||
| - qt >=5.15.0 | ||
| - redis-py | ||
| - reportlab | ||
| - requests | ||
| # - sasview # does not work with pyqt>=5.15 | ||
| - scikit-beam >=0.0.24 | ||
| - scikit-learn | ||
| - scipy >=1.9 | ||
| - seaborn | ||
| - silx | ||
| - sixtools | ||
| - slackclient | ||
| - smi-analysis | ||
| - sqlalchemy >=2.0.20 | ||
| - suitcase-csv | ||
| - suitcase-json-metadata | ||
| - suitcase-jsonl | ||
| - suitcase-mongo >=0.4.0 | ||
| - suitcase-msgpack | ||
| - suitcase-specfile | ||
| - suitcase-tiff >=0.4.0 | ||
| - suitcase-utils | ||
| - sympy | ||
| - toml | ||
| - tomopy >=1.12.2 | ||
| - tornado | ||
| - tqdm | ||
| - tzlocal !=3.0 | ||
| - xlrd | ||
| - xlwt | ||
| - xmidas >=0.1.2 | ||
| - xray-vision >=0.1.1 | ||
| - xraylarch >=0.9.66 | ||
| - zbar # dependency of pyzbar | ||
| # Simulation packages: | ||
| - oscars | ||
| - shadow3 >=23.1.4 | ||
| - srwpy >=4.0.0b1 | ||
| - sirepo-bluesky >=0.6.2 | ||
| - xrt | ||
| - zict <3.0.0 | ||
| - pip: | ||
| - mimesis | ||
| - pyhyperscattering[all] | ||
| #***************************************************************************# | ||
| # # | ||
| # Dependencies from the `nsls2-collection` metapackage # | ||
| # # | ||
| #***************************************************************************# | ||
| - bloptools >=0.3.0 | ||
| - bluesky-darkframes >=0.6.0 | ||
| - caproto | ||
| - emojis | ||
| - happi | ||
| - pexpect | ||
| # - pydm | ||
| - pyolog >=4.5.0 | ||
| - pyserial | ||
| - python-confluent-kafka | ||
| - pyzenodo3 | ||
| - simple-pid | ||
| - slack-sdk | ||
| # Beamline-specific packages | ||
| - hklpy # [linux] | ||
| - hxnfly >=0.0.11 | ||
| - kkcalc | ||
| - ppmac | ||
| - pychx >=4.1.2 | ||
| - xpdacq ==1.0.0 | ||
| # Debugging tools: | ||
| - hunter | ||
| - logging_tree | ||
| # Profiling tools: | ||
| - line_profiler | ||
| - pyinstrument | ||
| - pyperformance | ||
| # ML: | ||
| - botorch | ||
| - gpytorch | ||
| - ortools-python | ||
| - pytorch | ||
| - scikit-optimize |