convert a blast output to a bed file
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
t
.gitignore
LICENSE
README.org
blast2bed

README.org

blast2bed

Description

This script can be used to convert a tabular blast output to a bed file.

Usage

./blast2bed <input-file>

Notes

  • The input file should be generated with the outfmt 6 or 7 flag.
  • If the input file name has a ‘.bls’ file extension, it will be replaced by ‘.bed’ for the output file. Otherwise, the output file will be <inputfile>.bed
  • The score is always set to 0

The resulting bed file has the format:

<subjectID> <start> <end> <QueryID> <score> <strand>