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Nucleotid.es Data

This repository contains all the input data used by nucleotid.es. These data are stored as YAML in the data directory. Each of the data are described in more detain in the specification.mkd file.

Testing

All the data have their own schema which can be used for validation. Each schema can be found in the schema directory and has the same name as the corresponding file in the data directory. After installing dependencies with ./script/bootstrap, a schema is used to validate a file as follows:

bundle exec kwalify -lf schema/benchmark.yml data/benchmark.yml

The command ./script/test will test all data files to ensure they are valid. This is the command used by the continuous integration service every time there is a commit or pull request.

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Structured input data for nucleotid.es bioinformatics software benchmarking

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