Build error (symbol relocation) when installing from source #522

trbabb · 2019-10-10T05:35:44Z

I've attempted to build the llvmlite from source on an Ubuntu 18.04 instance. I'm building outside of Conda, following the directions in the docs— I've built llvm 8.0 with the supplied patches, which succeeded (but only after doing export RECIPE_DIR=/path/to/llvmlite/conda-recipes/llvmdev— that probably ought to be in the docs).

I'm avoiding Conda because I need to deploy to virtualenv (many of them per machine), and I'm not familiar enough with Conda to figure out how to make them play together (assuming it's possible); the Conda docs seem to suggest that attempting this is brittle.

With export LLVM_CONFIG=/path/to/my/patched/llvm8/bin/llvm-config running either python3 setup.py build or pip3 install /path/to/local/llvmlite (the latter being the deploy path for virtualenv) will fail with:

g++  -shared   -I/usr/lib/llvm-numba/llvm8/include -std=c++11 -fno-exceptions -fno-rtti -D_GNU_SOURCE -D_DEBUG -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__STDC_LIMIT_MACROS -fno-rtti -g -DHAVE_SVML -flto assembly.cpp bitcode.cpp core.cpp initfini.cpp module.cpp value.cpp executionengine.cpp transforms.cpp passmanagers.cpp targets.cpp dylib.cpp linker.cpp object_file.cpp -o libllvmlite.so  -L/usr/lib/llvm-numba/llvm8/lib -flto -Wl,--exclude-libs=ALL -lLLVMFuzzMutate -lLLVMCoverage -lLLVMDlltoolDriver -lLLVMOrcJIT -lLLVMMCA -lLLVMWindowsManifest -lLLVMTextAPI -lLLVMMCJIT -lLLVMCoroutines -lLLVMLTO -lLLVMPasses -lLLVMObjCARCOpts -lLLVMSymbolize -lLLVMDebugInfoPDB -lLLVMMIRParser -lLLVMTableGen -lLLVMIntelJITEvents -lLLVMDebugInfoDWARF -lLLVMXRay -lLLVMX86Disassembler -lLLVMX86AsmParser -lLLVMX86CodeGen -lLLVMX86Desc -lLLVMX86Info -lLLVMX86AsmPrinter -lLLVMX86Utils -lLLVMWebAssemblyDisassembler -lLLVMWebAssemblyCodeGen -lLLVMWebAssemblyDesc -lLLVMWebAssemblyAsmPrinter -lLLVMWebAssemblyAsmParser -lLLVMWebAssemblyInfo -lLLVMNVPTXCodeGen -lLLVMNVPTXDesc -lLLVMNVPTXInfo -lLLVMNVPTXAsmPrinter -lLLVMAMDGPUDisassembler -lLLVMMCDisassembler -lLLVMAMDGPUCodeGen -lLLVMGlobalISel -lLLVMSelectionDAG -lLLVMipo -lLLVMInstrumentation -lLLVMVectorize -lLLVMLinker -lLLVMIRReader -lLLVMAsmParser -lLLVMAsmPrinter -lLLVMAMDGPUAsmParser -lLLVMAMDGPUDesc -lLLVMAMDGPUInfo -lLLVMAMDGPUAsmPrinter -lLLVMAMDGPUUtils -lLLVMObjectYAML -lLLVMOptRemarks -lLLVMLibDriver -lLLVMOption -lLLVMLineEditor -lLLVMInterpreter -lLLVMExecutionEngine -lLLVMRuntimeDyld -lLLVMCodeGen -lLLVMTarget -lLLVMScalarOpts -lLLVMInstCombine -lLLVMAggressiveInstCombine -lLLVMTransformUtils -lLLVMBitWriter -lLLVMAnalysis -lLLVMProfileData -lLLVMObject -lLLVMMCParser -lLLVMMC -lLLVMDebugInfoCodeView -lLLVMDebugInfoMSF -lLLVMBitReader -lLLVMCore -lLLVMBinaryFormat -lLLVMSupport -lLLVMDemangle -lz -lrt -ldl -lpthread -lm

/usr/bin/ld: /tmp/ccmiOUve.ltrans0.ltrans.o: relocation R_X86_64_PC32 against symbol `LLVMPY_CreateString' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: Bad value
collect2: error: ld returned 1 exit status
Makefile.linux:20: recipe for target 'libllvmlite.so' failed
make: *** [libllvmlite.so] Error 1
Traceback (most recent call last):
  File "/home/ubuntu/sandbox/blugger/llvmlite/ffi/build.py", line 168, in <module>
    main()
  File "/home/ubuntu/sandbox/blugger/llvmlite/ffi/build.py", line 158, in main
    main_posix('linux', '.so')
  File "/home/ubuntu/sandbox/blugger/llvmlite/ffi/build.py", line 150, in main_posix
    subprocess.check_call(['make', '-f', makefile])
  File "/usr/lib/python3.6/subprocess.py", line 311, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['make', '-f', 'Makefile.linux']' returned non-zero exit status 2.
error: command '/usr/bin/python3' failed with exit status 1

If I follow the error and add -fPIC to the LDFLAGS of llvmlite/ffi/Makefile.linux, the build succeeds and passes tests.

Is this something that should be patched or added to the docs, or am I bungling something? Is this the correct fix?

(Even better, if >=30.0 is expected to be available PyPI shortly, that would probably moot my problem).

thanks for any help!

The text was updated successfully, but these errors were encountered:

stuartarchibald · 2019-10-10T08:41:15Z

Thanks for the report. Suspect this is related to #502 and #518. Are you building from the master branch?

FWIW 0.30.0 wheels will be out within the next few days.

trbabb · 2019-10-10T21:32:43Z

Yes, building from master.

Just found #502 and am currently working around with CXXFLAGS.

stuartarchibald · 2019-10-11T11:41:01Z

Yes, building from master.

Just found #502 and am currently working around with CXXFLAGS.

Great, if that doesn't work please shout. Also, wheels are up for 0.30.0.

jvesely · 2019-10-28T23:08:54Z

It'd be nice if pip install llvmlite built a local wheel instead of just calling setup.py install (scipy does that), but I have no idea how pip decides for one or the other.

EDIT: nvm, pip does that automatically if wheel is installed.

karolyi · 2020-07-21T13:43:27Z

I second this issue. llvmlite won't build, not even when I run it with CXXFLAGS=-fPIC python -m pip install -U llvmlite.

I'm trying to build this on FreeBSD.

karolyi · 2020-07-21T15:00:59Z

Also tried to build with pip from master (CXXFLAGS='-fPIC' python -m pip install -U git+https://github.com/numba/llvmlite.git) but to avail.

can we pick up some speed on this, please?

jvesely · 2020-07-21T15:46:26Z

Also tried to build with pip from master (CXXFLAGS='-fPIC' python -m pip install -U git+https://github.com/numba/llvmlite.git) but to avail.

can we pick up some speed on this, please?

the workaround is to install the wheel package. pip will automatically build local wheels and use them to install sdist packages.

nvm: the workaround only works for Linux sdist packages

karolyi · 2020-07-21T15:52:16Z

Also tried to build with pip from master (CXXFLAGS='-fPIC' python -m pip install -U git+https://github.com/numba/llvmlite.git) but to avail.
can we pick up some speed on this, please?

the workaround is to install the wheel package. pip will automatically build local wheels and use them to install sdist packages.

That is already done from the get-go. Whenever I install a venv, I start with python -m pip install -U pip wheel setuptools to avoid further errors.

Here's the output of CXXFLAGS='-fPIC' python -m pip install -U git+https://github.com/numba/llvmlite.git:

Collecting git+https://github.com/numba/llvmlite.git
  Cloning https://github.com/numba/llvmlite.git to /tmp/pip-req-build-8p1rnjsr
  Running command git clone -q https://github.com/numba/llvmlite.git /tmp/pip-req-build-8p1rnjsr
Building wheels for collected packages: llvmlite
  Building wheel for llvmlite (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: /home/project-prod/project/root/venv/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-8p1rnjsr/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-8p1rnjsr/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-dti8h52l
       cwd: /tmp/pip-req-build-8p1rnjsr/
  Complete output (125 lines):
  /home/project-prod/project/root/venv/lib/python3.7/site-packages/setuptools/dist.py:458: UserWarning: Normalizing '0.34.0dev0' to '0.34.0.dev0'
    warnings.warn(tmpl.format(**locals()))
  running bdist_wheel
  /home/project-prod/project/root/venv/bin/python /tmp/pip-req-build-8p1rnjsr/ffi/build.py
  LLVM version... clang++ -std=c++11 -stdlib=libc++ -shared -I/usr/local/llvm90/include -std=c++11 -fno-exceptions -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__STDC_LIMIT_MACROS -fno-rtti -g assembly.cpp bitcode.cpp core.cpp initfini.cpp module.cpp value.cpp  executionengine.cpp transforms.cpp passmanagers.cpp targets.cpp dylib.cpp  linker.cpp object_file.cpp -o libllvmlite.so -L/usr/local/llvm90/lib -lLLVM-9
  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/assembly-f4c9d4.o
  >>> referenced by assembly.cpp:25
  >>>               /tmp/assembly-f4c9d4.o:(LLVMPY_ParseAssembly)

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/assembly-f4c9d4.o
  >>> referenced by assembly.cpp:30
  >>>               /tmp/assembly-f4c9d4.o:(LLVMPY_ParseAssembly)

  ld: error: can't create dynamic relocation R_X86_64_64 against symbol: vtable for llvm::raw_string_ostream in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /usr/local/llvm90/lib/libLLVM-9.so
  >>> referenced by raw_ostream.h:493 (/usr/local/llvm90/include/llvm/Support/raw_ostream.h:493)
  >>>               /tmp/assembly-f4c9d4.o:(llvm::raw_string_ostream::raw_string_ostream(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&))

  ld: error: can't create dynamic relocation R_X86_64_64 against symbol: vtable for llvm::raw_ostream in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /usr/local/llvm90/lib/libLLVM-9.so
  >>> referenced by raw_ostream.h:88 (/usr/local/llvm90/include/llvm/Support/raw_ostream.h:88)
  >>>               /tmp/assembly-f4c9d4.o:(llvm::raw_ostream::raw_ostream(bool))

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/bitcode-d5b48d.o
  >>> referenced by bitcode.cpp:25
  >>>               /tmp/bitcode-d5b48d.o:(LLVMPY_ParseBitcode)

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by module.cpp:117
  >>>               /tmp/module-299c33.o:(LLVMPY_PrintModuleToString)

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
  >>>               /tmp/module-299c33.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::GlobalVariable, false, false, void>, false, false>::operator*() const)

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
  >>>               /tmp/module-299c33.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::GlobalVariable, false, false, void>, false, false>::operator*() const)

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
  >>>               /tmp/module-299c33.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::GlobalVariable, false, false, void>, false, false>::operator*() const)

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
  >>>               /tmp/module-299c33.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::Function, false, false, void>, false, true>::operator*() const)

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
 >>> defined in /tmp/module-299c33.o
  >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
  >>>               /tmp/module-299c33.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::Function, false, false, void>, false, true>::operator*() const)

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
  >>>               /tmp/module-299c33.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::Function, false, false, void>, false, true>::operator*() const)

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
  >>>               /tmp/module-299c33.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >, llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >::initEmpty())

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
  >>>               /tmp/module-299c33.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >, llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >::initEmpty())

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
  >>>               /tmp/module-299c33.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >, llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >::initEmpty())

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
  >>>               /tmp/module-299c33.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >, llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >::initEmpty())

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
  >>>               /tmp/module-299c33.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >, llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >::initEmpty())

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
  >>>               /tmp/module-299c33.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >, llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >::initEmpty())

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
  >>>               /tmp/module-299c33.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Type*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Type*>, llvm::detail::DenseSetPair<llvm::Type*> >, llvm::Type*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Type*>, llvm::detail::DenseSetPair<llvm::Type*> >::initEmpty())

  ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
  >>> defined in /tmp/module-299c33.o
  >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
  >>>               /tmp/module-299c33.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Type*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Type*>, llvm::detail::DenseSetPair<llvm::Type*> >, llvm::Type*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Type*>, llvm::detail::DenseSetPair<llvm::Type*> >::initEmpty())

  ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors)
  clang++: error: linker command failed with exit code 1 (use -v to see invocation)
  *** Error code 1

  Stop.
  make: stopped in /tmp/pip-req-build-8p1rnjsr/ffi
  9.0.1

  SVML not detected
  Traceback (most recent call last):
    File "/tmp/pip-req-build-8p1rnjsr/ffi/build.py", line 191, in <module>
      main()
    File "/tmp/pip-req-build-8p1rnjsr/ffi/build.py", line 183, in main
      main_posix('freebsd', '.so')
    File "/tmp/pip-req-build-8p1rnjsr/ffi/build.py", line 173, in main_posix
      subprocess.check_call(['make', '-f', makefile])
    File "/usr/local/lib/python3.7/subprocess.py", line 363, in check_call
      raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['make', '-f', 'Makefile.freebsd']' returned non-zero exit status 1.
  error: command '/home/project-prod/project/root/venv/bin/python' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for llvmlite
  Running setup.py clean for llvmlite
Failed to build llvmlite
Installing collected packages: llvmlite
    Running setup.py install for llvmlite ... error
    ERROR: Command errored out with exit status 1:
     command: /home/project-prod/project/root/venv/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-8p1rnjsr/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-8p1rnjsr/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-guyjtleo/install-record.txt --single-version-externally-managed --compile --install-headers /home/project-prod/project/root/venv/include/site/python3.7/llvmlite
         cwd: /tmp/pip-req-build-8p1rnjsr/
    Complete output (128 lines):
    /home/project-prod/project/root/venv/lib/python3.7/site-packages/setuptools/dist.py:458: UserWarning: Normalizing '0.34.0dev0' to '0.34.0.dev0'
      warnings.warn(tmpl.format(**locals()))
    running install
    running build
    got version from VCS {'version': '0.34.0dev0', 'full': '118e993ff33ab240679595511e59b891900e972e'}
    running build_ext
    /home/project-prod/project/root/venv/bin/python /tmp/pip-req-build-8p1rnjsr/ffi/build.py
    LLVM version... clang++ -std=c++11 -stdlib=libc++ -shared -I/usr/local/llvm90/include -std=c++11 -fno-exceptions -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__STDC_LIMIT_MACROS -fno-rtti -g assembly.cpp bitcode.cpp core.cpp initfini.cpp module.cpp value.cpp  executionengine.cpp transforms.cpp passmanagers.cpp targets.cpp dylib.cpp  linker.cpp object_file.cpp -o libllvmlite.so -L/usr/local/llvm90/lib -lLLVM-9
    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/assembly-8865e4.o
    >>> referenced by assembly.cpp:25
    >>>               /tmp/assembly-8865e4.o:(LLVMPY_ParseAssembly)

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/assembly-8865e4.o
    >>> referenced by assembly.cpp:30
    >>>               /tmp/assembly-8865e4.o:(LLVMPY_ParseAssembly)

    ld: error: can't create dynamic relocation R_X86_64_64 against symbol: vtable for llvm::raw_string_ostream in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /usr/local/llvm90/lib/libLLVM-9.so
    >>> referenced by raw_ostream.h:493 (/usr/local/llvm90/include/llvm/Support/raw_ostream.h:493)
    >>>               /tmp/assembly-8865e4.o:(llvm::raw_string_ostream::raw_string_ostream(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&))

    ld: error: can't create dynamic relocation R_X86_64_64 against symbol: vtable for llvm::raw_ostream in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /usr/local/llvm90/lib/libLLVM-9.so
    >>> referenced by raw_ostream.h:88 (/usr/local/llvm90/include/llvm/Support/raw_ostream.h:88)
    >>>               /tmp/assembly-8865e4.o:(llvm::raw_ostream::raw_ostream(bool))

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/bitcode-28fc85.o
    >>> referenced by bitcode.cpp:25
    >>>               /tmp/bitcode-28fc85.o:(LLVMPY_ParseBitcode)

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by module.cpp:117
    >>>               /tmp/module-350ca1.o:(LLVMPY_PrintModuleToString)

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
    >>>               /tmp/module-350ca1.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::GlobalVariable, false, false, void>, false, false>::operator*() const)

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
    >>>               /tmp/module-350ca1.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::GlobalVariable, false, false, void>, false, false>::operator*() const)

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
    >>>               /tmp/module-350ca1.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::GlobalVariable, false, false, void>, false, false>::operator*() const)

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
    >>>               /tmp/module-350ca1.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::Function, false, false, void>, false, true>::operator*() const)

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
    >>>               /tmp/module-350ca1.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::Function, false, false, void>, false, true>::operator*() const)

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by ilist_iterator.h:139 (/usr/local/llvm90/include/llvm/ADT/ilist_iterator.h:139)
    >>>               /tmp/module-350ca1.o:(llvm::ilist_iterator<llvm::ilist_detail::node_options<llvm::Function, false, false, void>, false, true>::operator*() const)

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
    >>>               /tmp/module-350ca1.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >, llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >::initEmpty())

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
    >>>               /tmp/module-350ca1.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >, llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >::initEmpty())

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
    >>>               /tmp/module-350ca1.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >, llvm::Value const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Value const*>, llvm::detail::DenseSetPair<llvm::Value const*> >::initEmpty())

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
    >>>               /tmp/module-350ca1.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >, llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >::initEmpty())

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
    >>>               /tmp/module-350ca1.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >, llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >::initEmpty())

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
    >>>               /tmp/module-350ca1.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >, llvm::MDNode const*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::MDNode const*>, llvm::detail::DenseSetPair<llvm::MDNode const*> >::initEmpty())

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
    >>>               /tmp/module-350ca1.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Type*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Type*>, llvm::detail::DenseSetPair<llvm::Type*> >, llvm::Type*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Type*>, llvm::detail::DenseSetPair<llvm::Type*> >::initEmpty())

    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
    >>> defined in /tmp/module-350ca1.o
    >>> referenced by DenseMap.h:373 (/usr/local/llvm90/include/llvm/ADT/DenseMap.h:373)
    >>>               /tmp/module-350ca1.o:(llvm::DenseMapBase<llvm::DenseMap<llvm::Type*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Type*>, llvm::detail::DenseSetPair<llvm::Type*> >, llvm::Type*, llvm::detail::DenseSetEmpty, llvm::DenseMapInfo<llvm::Type*>, llvm::detail::DenseSetPair<llvm::Type*> >::initEmpty())

    ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors)
    clang++: error: linker command failed with exit code 1 (use -v to see invocation)
    *** Error code 1

    Stop.
    make: stopped in /tmp/pip-req-build-8p1rnjsr/ffi
    9.0.1

    SVML not detected
    Traceback (most recent call last):
      File "/tmp/pip-req-build-8p1rnjsr/ffi/build.py", line 191, in <module>
        main()
      File "/tmp/pip-req-build-8p1rnjsr/ffi/build.py", line 183, in main
        main_posix('freebsd', '.so')
      File "/tmp/pip-req-build-8p1rnjsr/ffi/build.py", line 173, in main_posix
        subprocess.check_call(['make', '-f', makefile])
      File "/usr/local/lib/python3.7/subprocess.py", line 363, in check_call
        raise CalledProcessError(retcode, cmd)
    subprocess.CalledProcessError: Command '['make', '-f', 'Makefile.freebsd']' returned non-zero exit status 1.
    error: command '/home/project-prod/project/root/venv/bin/python' failed with exit status 1
    ----------------------------------------
ERROR: Command errored out with exit status 1: /home/project-prod/project/root/venv/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-8p1rnjsr/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-8p1rnjsr/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-guyjtleo/install-record.txt --single-version-externally-managed --compile --install-headers /home/project-prod/project/root/venv/include/site/python3.7/llvmlite Check the logs for full command output.

Sorry, didn't want to spam the issue with the entire output but it seems inevitable.

jvesely · 2020-07-21T16:39:57Z

   LLVM version... clang++ -std=c++11 -stdlib=libc++ -shared -I/usr/local/llvm90/include -std=c++11 -fno-exceptions -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__STDC_LIMIT_MACROS -fno-rtti -g assembly.cpp bitcode.cpp core.cpp initfini.cpp module.cpp value.cpp  executionengine.cpp transforms.cpp passmanagers.cpp targets.cpp dylib.cpp  linker.cpp object_file.cpp -o libllvmlite.so -L/usr/local/llvm90/lib -lLLVM-9
    ld: error: can't create dynamic relocation R_X86_64_64 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output

the above line needs -fPIC.

sorry got the issues mixed up. One is that setup.py only adds -fPIC when building wheel (that's what the workaround is for), the other one is that it only adds -fPIC on Linux.

karolyi · 2020-07-21T16:41:42Z

I realized this ... the problem is, it doesn't take the passed CXXFLAGS into account, not even with master. Hence me posting in here.

Exporting CXXFLAGS doesn't work either.

esc · 2020-07-21T17:35:18Z

@karolyi thanks for following up on this issue. Are you able to build it from a source clone at least?

karolyi · 2020-07-21T17:40:00Z

@esc hey, long time no see :)
CXXFLAGS='-fPIC' python -m pip install -U git+https://github.com/numba/llvmlite.git builds from master, so the answer would be no.

esc · 2020-07-21T17:42:44Z

@karolyi 👋

My suggestion would be to obtain a clone and look at how setup.py bootstraps ffi/build.py which in turn shells out to make to figure out where your CXXFLAGS is being swallowed.

On systems that do not build PIC by default, linking libllvmlite.so fails. This commit adds an option to the `build_ext` command in setup.py (`--pic`) to compile with `-fPIC`. Related issues: numba#553, numba#542, numba#522 - this commit may address some of these issues.

karolyi mentioned this issue Jul 21, 2020

Build breaks on FreeBSD: it needs -fPIC #542

Closed

esc added needtriage Needs to be triaged further build labels Jul 21, 2020

gmarkall mentioned this issue Aug 21, 2020

Always build with -fPIC on Linux and BSD #627

Merged

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Build error (symbol relocation) when installing from source #522

Build error (symbol relocation) when installing from source #522

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Build error (symbol relocation) when installing from source #522

Build error (symbol relocation) when installing from source #522

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