Import missing function and fix error when vignette tries to plot tra…

…nscripts

NAMESPACE

@@ -153,6 +153,7 @@ importFrom(shiny,plotOutput)
 importFrom(shiny,radioButtons)
 importFrom(shiny,reactive)
 importFrom(shiny,removeModal)
+importFrom(shiny,renderPlot)
 importFrom(shiny,renderText)
 importFrom(shiny,renderUI)
 importFrom(shiny,runApp)

R/analysis_diffSplicing.R

@@ -422,7 +422,7 @@ diffAnalyses <- function(psi, groups=NULL,
 #' @param output Shiny ouput
 #' @param session Shiny session
 #' 
-#' @importFrom shiny observe observeEvent updateSelectizeInput
+#' @importFrom shiny observe observeEvent updateSelectizeInput renderPlot
 #' @importFrom shinyjs hide show
 #' @return NULL (this function is used to modify the Shiny session's state)
 diffSplicingServer <- function(input, output, session) {

vignettes/CLI_tutorial.Rmd

@@ -466,7 +466,7 @@ It is also possible to plot transcripts and proteins related to the gene
 associated to a given splicing event. To retrieve and plot transcript
 information from [ENSEMBL][4]:
 
-```{r plot transcripts}
+```{r plot transcripts, eval=FALSE}
 parsed <- parseSplicingEvent(event)
 info <- queryEnsemblByEvent(event, species="human", assembly="hg19")
 plotTranscripts(info, parsed$pos[[1]])
@@ -475,6 +475,9 @@ plotTranscripts(info, parsed$pos[[1]])
 To retrieve and plot protein information from [UniProt][5]:
 
 ```{r plot proteins}
+parsed <- parseSplicingEvent(event)
+info <- queryEnsemblByEvent(event, species="human", assembly="hg19")
+
 # Some of these transcripts have no corresponding protein
 proteins <- info$Transcript$Translation$id
 protein <- proteins[[6]]