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goin 2 bed
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@sneakers-the-rat
sneakers-the-rat committed Apr 16, 2021
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2 changes: 2 additions & 0 deletions .gitignore
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.idea
.DS_Store
examples/wehr/2021-02-26_17-19-10_mouse-0232
2 changes: 1 addition & 1 deletion docs/conf.py
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# robbed from https://github.com/spatialaudio/nbsphinx/blob/feb64b00a0c0310991f0c17c712842725c43d163/doc/conf.py#L34
# see https://nbsphinx.readthedocs.io/en/0.8.3/prolog-and-epilog.html
nbsphinx_prolog = r"""
{% set docname = env.doc2path(env.docname, base=None).replace('.nblink', '.ipynb') %}
{% set docname = env.doc2path(env.docname, base=None).replace('nblink', 'ipynb') %}
.. raw:: html
<div class="admonition note">
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108 changes: 104 additions & 4 deletions examples/wehr/wehr-nick.ipynb
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}
},
"source": [
"# Sattler"
"# Sattler\n",
"\n",
"Dataset: https://www.dropbox.com/sh/4adrgjsee60vcvj/AADJ-hbes1uHg3FE0et69sy5a?dl=1\n",
"\n",
"Say we have these files..."
]
},
{
"cell_type": "code",
"execution_count": null,
"outputs": [],
"source": [],
"execution_count": 9,
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"['.DS_Store',\n",
" '2021-02-26_17-19-12_mouse-0232',\n",
" '2021-02-26_17-19-12_mouse-0232/103_ADC1.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_ADC2.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_ADC3.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_ADC4.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_ADC5.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_ADC6.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_ADC7.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_ADC8.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_AUX1.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_AUX2.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_AUX3.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH1.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH10.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH11.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH12.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH13.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH14.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH15.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH16.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH17.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH18.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH19.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH2.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH20.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH21.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH22.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH23.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH24.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH25.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH26.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH27.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH28.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH29.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH3.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH30.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH31.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH32.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH4.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH5.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH6.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH7.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH8.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/103_CH9.continuous',\n",
" '2021-02-26_17-19-12_mouse-0232/Continuous_Data.openephys',\n",
" '2021-02-26_17-19-12_mouse-0232/TT0.spikes',\n",
" '2021-02-26_17-19-12_mouse-0232/TT1.spikes',\n",
" '2021-02-26_17-19-12_mouse-0232/TT2.spikes',\n",
" '2021-02-26_17-19-12_mouse-0232/TT3.spikes',\n",
" '2021-02-26_17-19-12_mouse-0232/TT4.spikes',\n",
" '2021-02-26_17-19-12_mouse-0232/TT5.spikes',\n",
" '2021-02-26_17-19-12_mouse-0232/TT6.spikes',\n",
" '2021-02-26_17-19-12_mouse-0232/TT7.spikes',\n",
" '2021-02-26_17-19-12_mouse-0232/all_channels.events',\n",
" '2021-02-26_17-19-12_mouse-0232/messages.events',\n",
" '2021-02-26_17-19-12_mouse-0232/notebook.mat',\n",
" '2021-02-26_17-19-12_mouse-0232/settings.xml',\n",
" '2021-02-26_17-19-12_mouse-0232/stimlog.txt',\n",
" 'Sky_mouse-0232_2021-02-26T17_19_10.csv',\n",
" 'Sky_mouse-0232_2021-02-26T17_19_10.mp4',\n",
" 'Sky_mouse-0232_2021-02-26T17_19_10_reenc.mp4',\n",
" 'TTL_mouse-0232_2021-02-26T17_19_10.csv']\n"
]
}
],
"source": [
"from pathlib import Path\n",
"from pprint import pprint\n",
"\n",
"# we've symlinked the example data folder to the cwd for this example\n",
"base_path = Path().cwd() / '2021-02-26_17-19-10_mouse-0232'\n",
"\n",
"data_files = [str(path.relative_to(base_path)) for path in base_path.glob(\"**/*\")]\n",
"pprint(sorted(data_files))"
],
"metadata": {
"collapsed": false,
"pycharm": {
"name": "#%%\n"
}
}
},
{
"cell_type": "markdown",
"source": [
"Which compose a dataset of\n",
"\n",
"* Continuous extracellular ephys data recorded by open ephys\n",
"* Spikes sorted by Kilosort\n",
"* Stimulus information from some custom behavioral software\n",
"* Raw video of the behaving animal.\n"
],
"metadata": {
"collapsed": false,
"pycharm": {
"name": "#%% md\n"
}
}
}
],
"metadata": {
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